Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0713 ATGGATCATGTTATTGGTAGAAAATTCAAGCTTGGGAGGAAAATTGGAGCTGGATCATTTGGAGAGCTTTATTTGGGTGTTAATGTACAAAGTGGAGAGGAGGTGGCTGTCAAGTTGGAACCTGCGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGAATACCCCATTTAAAATGGTTTGGAGTTGAAGGTGATTACAATGTCATGGTAATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAACCGAAAATTATCTCTGAAAGCAGTTCTGATGCTTGCAGATCAGCTGATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTTTTGATGGGTTTAGGCCGCAAGGCAAACCAGGTATATGTTATTGATTATGGCCTTGCAAAAAAGTATAGGGATCTTCAAACACATAAGCATATACTATACAGGGAAAATAAGAACCTCACTGGAACTGCTCGATATGCAAGTGTTAATACTCATCTTGGAGTTGAACTTGTTCTGATTCTTTTTCCAGAACAAAGCAGAAGAGATGATTTAGAATCGCTTGGCTATGTGCTCATTCTCCCTTGGCAAGGCATGAAAGGTGGAACTAAAAAGCAAAAGTATGACAAGATCAGTGAAAAGAAGATGCTTACTCCGATAGAGGTCTTATGCAAGTCATATCCATCAGAATTCACTTCTTACTTCCACTACTGCCGATCGTTGAGGTTCGAAGATAAGCCTGATTATTCATATCTTAAGAGACTCTTTCGGGACCTATTCATTCGAGAAGGTTATCAGTTTGACTATGTCTTTGATTGGACTATGTTGAAGTATCCACAAATTGGATCCAGTTCTAGTGCTCGATCAAGTGGGAAGCCAGCCATAAACGTAGACCTGTCAGGAGAGAGAGTCGAACGGCCTTCAGGTGTGCGAGAGGTTCGGGATAGATTGCCTGGTGCACTTGAGGAATTTGCAAGAAGGAATAAGCCAAATAGCTCTGGGCTTGGTCTGCATGGTGATAAGTCTAGGCATAGGTCTTCAGATGATGTGCCATCTTCCAAAGATGTGCAAGCTGATTCTGAGAGGCCTCGTAGTTCTTCTCGTAATGGTAGTGCCTCAAAACGACCTGTCGCATCAAGCAGCCGACCAAGCACATCTGGCGAACCTAATGAAAGCCGTTCTAGTCGAGTGGTCTCAAGCAGTGGTCGTCTGTCTACAACTCATAGGATTCAACCAGGTTTAGAGTCCAAAACATCCTTTACTCATGCTTCAGGTTCAAGAGGTGGTCGTCTGTCTACGACTCAGAAGATTCAACCAGGTTTAGAGTCCAAAACATCCTTCACTCGCGCTTCAGGGTCAAGAGGTGGTCGCGAAGATACACTCAGGAGCTTTGAACTCCTATCGATCGGTACAGGAAAAAGGAAATGA 1485 0.4316 MDHVIGRKFKLGRKIGAGSFGELYLGVNVQSGEEVAVKLEPAKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKAVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHILYRENKNLTGTARYASVNTHLGVELVLILFPEQSRRDDLESLGYVLILPWQGMKGGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGSSSSARSSGKPAINVDLSGERVERPSGVREVRDRLPGALEEFARRNKPNSSGLGLHGDKSRHRSSDDVPSSKDVQADSERPRSSSRNGSASKRPVASSSRPSTSGEPNESRSSRVVSSSGRLSTTHRIQPGLESKTSFTHASGSRGGRLSTTQKIQPGLESKTSFTRASGSRGGREDTLRSFELLSIGTGKRK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0713 494 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal12g0713 494 Pfam Protein kinase domain 10 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0713 494 Gene3D Transferase(Phosphotransferase) domain 1 1 325 - -
Lal12g0713 494 SUPERFAMILY Protein kinase-like (PK-like) 4 292 IPR011009 -
Lal12g0713 494 MobiDBLite consensus disorder prediction 301 494 - -
Lal12g0713 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal12g0713 494 PANTHER CASEIN KINASE-RELATED 1 446 - -
Lal12g0713 494 ProSiteProfiles Protein kinase domain profile. 9 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0713 494 MobiDBLite consensus disorder prediction 382 472 - -
Lal12g0713 494 MobiDBLite consensus disorder prediction 357 381 - -
Lal12g0713 494 MobiDBLite consensus disorder prediction 323 342 - -
Lal12g0713 494 SMART serkin_6 9 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0713 494 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0713 Lal-Chr12 5403266 5408777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0713 5 210 EF-hand Containing Proteins AT3G50530 27.064 5.14e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal12g0713 Pkinase 7.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0713 K08960 - jre:108991207 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0713 12 5403266 5408777 Lal12g0713 12 5403266 5408777 ECH
Lal12g0713 12 5403266 5408777 Lal13g0817 13 5492538 5497947 LSH
Lal12g0713 12 5403266 5408777 Lal24g0636 24 4674092 4679614 LSH