LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal12g0712	ATGGAATCTACGGGGATCTGGTTTAGCAAGTTAATGTCAAAAAACAAGGAACCCAGAATTATTGCAAAAGAAGGGTTAAAACCCCAAATAAATGAAGAAGCGCCTTCAAATGCGACCAAACAGAAGGTTGAAGCTGCAAAGCAATACATTGAAAACCATTATAAGAAGCAGATGAAGGACTTGCAGGAGAGGAAGGAGCGACGTAATATGCTAGAGAAAAAGTTGGCTGATGCTGATGTCTCTAAGGAAGAGCAGCACAACTTGCTTGATTATTTTGCCAAAAAGGAAAGGGAATACATGCGCCTTCAGAGGCATAAAATCGGGGCTGATGATTTTGAGCCCTTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTCAGACTCTGCAGAGAGAAGGCAACTGGTCATGTATATGCCATGAAGACGCTTAAGAAATCTGAGATGCTTCGCAGAGGCCAGGTTGAACATGTAAAAGCTGAGAGGAACCTACTTGCAGAAGTCAACAGTAATTGCATTTTAAAGCTTTATTGCTCATTTCAAGATGAAGAGTATTTATATCTCATAATGGAGTATCTACCTGGCGGTGATATGATGACATTGCTCATGCGGAAGGATGTACTGACAGAAGATGAGGCCAGGTTCTACGTTGGGGAGACTGTCCTAGCCTTAGAGTCGATTCATAAACATAATTATATTCATAGGGATATCAAGCCTGACAACTTACTGCTAGATAAAAATGGTCACATGAAATTATCAGATTTTGGATTATGTAAACCTATAGACTGCACTATTCTTCAGGAAAAGGACTTCTCTATTGGAGTCAATATAAGTGGAGCCCTCCAGAGTGATGGACATACTGTAGCTCCTAAAAGAACTCAGCAGGAGCAACTTCAGCATTGGCAGAAAAATAGACGAATGCTTGCGTATTCTACAGTTGGAACACCTGATTATATTGCCCCTGAAGTTCTACTGAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCTCTCGGAGCTGTAATGTATGAAATGCTAGTGGGATATCCACCCTTTTATGCAGATGAACCAATGTTGACTTGTAGGAAGATAGTAAATTGGAGAACTCATCTAAAGTTTCCAGAAGAAGCTAAATTATCTGCAGAGGCAAAGGACCTTATTAGTCAGCTCCTATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGCCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGACAAATTGTACCAAATGGAAGCTGCTTTTATTCCTGAGGTCAATGGTGAATTAGATACTCAAAATTTTGAGAATTTTGAAGAGGTGGACAAGGAAACTCTAACTCCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTCAACTTTGTCGGTTACACATATAAGAACTTCGAAATTGTAAATGATGATGGACTGAATGGAATTGCTGAGTTGAAGAAGAGCACAAAAACTAAACGACCATCTATTAACACCATATTTGCTGACGAAACGGCTATGTCCGCAAATCAACCTGACCAAGGGAGCTACTTAGAACGGTTGCCGACCCAGCAAGAAGTTCCGGAGAAGAGTGAATAG	1614	0.4108	MESTGIWFSKLMSKNKEPRIIAKEGLKPQINEEAPSNATKQKVEAAKQYIENHYKKQMKDLQERKERRNMLEKKLADADVSKEEQHNLLDYFAKKEREYMRLQRHKIGADDFEPLTMIGKGAFGEVRLCREKATGHVYAMKTLKKSEMLRRGQVEHVKAERNLLAEVNSNCILKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDVLTEDEARFYVGETVLALESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPIDCTILQEKDFSIGVNISGALQSDGHTVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAVMYEMLVGYPPFYADEPMLTCRKIVNWRTHLKFPEEAKLSAEAKDLISQLLCNVDQRLGTKGPDEIKAHPWFKGIEWDKLYQMEAAFIPEVNGELDTQNFENFEEVDKETLTPSKSGPWRKMLSSKDVNFVGYTYKNFEIVNDDGLNGIAELKKSTKTKRPSINTIFADETAMSANQPDQGSYLERLPTQQEVPEKSE	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal12g0712	537	ProSiteProfiles	AGC-kinase C-terminal domain profile.	412	484	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Lal12g0712	537	Gene3D	Transferase(Phosphotransferase) domain 1	196	429	-	-
	Lal12g0712	537	Pfam	Protein kinase domain	114	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal12g0712	537	SMART	serkin_6	112	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal12g0712	537	ProSiteProfiles	Protein kinase domain profile.	112	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal12g0712	537	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	34	512	-	-
	Lal12g0712	537	MobiDBLite	consensus disorder prediction	509	526	-	-
	Lal12g0712	537	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	231	243	IPR008271	GO:0004672\|GO:0006468
	Lal12g0712	537	Gene3D	Phosphorylase Kinase; domain 1	110	440	-	-
	Lal12g0712	537	CDD	STKc_NDR_like	110	475	-	-
	Lal12g0712	537	MobiDBLite	consensus disorder prediction	509	537	-	-
	Lal12g0712	537	Pfam	Protein kinase C terminal domain	430	474	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Lal12g0712	537	SMART	pkinase_C_6	412	476	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Lal12g0712	537	ProSitePatterns	Protein kinases ATP-binding region signature.	118	141	IPR017441	GO:0005524
	Lal12g0712	537	Coils	Coil	54	74	-	-
	Lal12g0712	537	PANTHER	SERINE/THREONINE-PROTEIN KINASE	34	512	-	-
	Lal12g0712	537	SUPERFAMILY	Protein kinase-like (PK-like)	89	464	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal12g0712	Lal-Chr12	5392712	5400302	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal12g0712	22	537	AGC Kinase Gene Family	AT3G23310	78.613	0.0	854

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Lal12g0712		Pkinase	9.3e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal12g0712	K08790		-	gmx:100783095	949.118

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal12g0712	12	5392712	5400302	Lal12g0712	12	5392712	5400302	ECH
	Lal12g0712	12	5392712	5400302	Lal13g0816	13	5484442	5490298	LSH
	Lal12g0712	12	5392712	5400302	Lal24g0635	24	4664421	4672550	LSH