Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0710 ATGGGACAATCGCAATCCAAAGGCGAATTGCTCTACCAGCAAGTCAGTTATGGGAACGTCGAAGGAATCAAATCCCTTCATAGAGAAGGTGCAGGCCTTGAGTGGATAGATAGAGAAGGAAAGACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTATAATGTTGCTAAAGCTTTGATAGAACTTGGAGCCAATGTTAATGCATACCGTCCAGGTCGTAATGCTGGGACACCATTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATCGTCAAGCTACTTCTTTCTCATGGAGCCAATGCTTTAGTTTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCAAGGGCCAAAGGACACAGCAATGTTGTTCGTGCATTTGAGAGTCATTTATGCTTGTTCTGCGGTTGGCTGCGAGAGTTTCATGGACCTGGGTTCCTAGAAGTGGTAGCTCCTCAGTTGGTATCTAGAAAAGTGTGGGTATCGTGTGATATGTTGTTGAAGCATATCAGTTCATTGATGAGTTTGCTATTTTATGATTGGGTGGTTGTCTTACCAGCTGGCTTCCGTAATCTTACCGGACCTTACAAGTTGGAGCTTGCAATATATTCTACTTTGCAGGATGCACGACCACGTACTATTATTGCTTTGTGGAAAGCGAATTTAGAAGAACCAAATCTTCGCCAGTCTGATCCGTCAGTGACAATTGTTGCTACCAGTACCACTATCAGTAATCTCCTATACCGAGTTCTTTTTCTTTTCATGCCTGTCTTTATCCAATCACTTTTGGAAATAGTTCCTTCATTCTTAACAGGGTTTTACAGTATGTTGACTTTTGGCTGCCTCTTTCCAGAAACACGCGTTAAACTTGGCCCTGTAAGTGAGAGCGACAGGCAACAGCTTACATGGTTTTCTAATGCATGCAAAGGAATTCCACAGGTAAATCCAGCATTTTTGCGTAATGATTTGGTTACAGTTCCACCAACAGCACCACCAGCTGCAGAAGACCCAGAGCTAGCTATGGCTATCCATGCATCCCTTCAGCATGCCATTAATGACAGGCCACCTTTCCCTGATGCCCATCCAAACTTTGAAGCAAGCTCTTCAATTGGAGTGAACAATACAAGCAAGCATGGTTTTGTAGGTACAGAAAATCCAAGTACCAGTGAAAGTGTGAATTTACATGAACCTGAGCAAGGTGGCAATAATCAGCATGTCCAAATCCTTGAAAATGACAATGTCTCTGCTGGCCATACTACTAGTGGCCTGGATTTCAATCCATCGGCACCTCCAGTTACTGACGTGGTTCCAGTAGATGGCCCGATTCAATATCCGGCAATTGATTTAAACCCCATTGATATGTCATCTACAGTTGTTGAGAAGCTACCTAAACAAGAAAAAGATGGTGATGGAAATAGTTCTTCATGTGTGATATGCTTAGATGCTCCTGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTCAAAACAAAGAAGTGGGGTTGCCCAGTATGTAGAGCTAAGATTGACCAAGTCATAAAGCTGTATCATGTTTGA 1587 0.4329 MGQSQSKGELLYQQVSYGNVEGIKSLHREGAGLEWIDREGKTPLIVACMNPELYNVAKALIELGANVNAYRPGRNAGTPLHHAAKRGLESIVKLLLSHGANALVLNDDCQTALEVARAKGHSNVVRAFESHLCLFCGWLREFHGPGFLEVVAPQLVSRKVWVSCDMLLKHISSLMSLLFYDWVVVLPAGFRNLTGPYKLELAIYSTLQDARPRTIIALWKANLEEPNLRQSDPSVTIVATSTTISNLLYRVLFLFMPVFIQSLLEIVPSFLTGFYSMLTFGCLFPETRVKLGPVSESDRQQLTWFSNACKGIPQVNPAFLRNDLVTVPPTAPPAAEDPELAMAIHASLQHAINDRPPFPDAHPNFEASSSIGVNNTSKHGFVGTENPSTSESVNLHEPEQGGNNQHVQILENDNVSAGHTTSGLDFNPSAPPVTDVVPVDGPIQYPAIDLNPIDMSSTVVEKLPKQEKDGDGNSSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYHV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0710 528 Pfam Zinc finger, C3HC4 type (RING finger) 475 522 - -
Lal12g0710 528 SUPERFAMILY RING/U-box 476 522 - -
Lal12g0710 528 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Lal12g0710 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 528 IPR013083 -
Lal12g0710 528 SUPERFAMILY Ankyrin repeat 10 133 IPR036770 -
Lal12g0710 528 PANTHER ROLLING PEBBLES, ISOFORM B 1 528 - -
Lal12g0710 528 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Lal12g0710 528 Gene3D - 3 149 IPR036770 -
Lal12g0710 528 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lal12g0710 528 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lal12g0710 528 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Lal12g0710 528 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Lal12g0710 528 SMART ring_2 477 515 IPR001841 -
Lal12g0710 528 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 528 - -
Lal12g0710 528 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Lal12g0710 528 ProSiteProfiles Zinc finger RING-type profile. 477 516 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0710 Lal-Chr12 5351409 5356807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0710 469 525 C3H Transcription Factor Family AT3G06140 31.579 1.10e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0710 - - lang:109354249 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0710 12 5351409 5356807 Lal12g0710 12 5351409 5356807 ECH
Lal12g0710 12 5351409 5356807 Lal24g0633 24 4651190 4655171 LSH