Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0708 ATGTATCTGTTAAGTGCAATTCATTTCTTTCTTTTTACCTCTTTCTGTGAAGTTTTCATTAATTTTGTCCGACTTCGATATCAAATTGTCTTGGAAAACTATAGGGAGGATGGCAAGTTACAATACTTCAGGGACCGAATTTTCCCGAAAAAAGAAAATGAGGCAAAGGCACCTGAAAATGTACCTTTGGTGCCATTGGCAAAAACACCAGAGGAGGTTTCTGCGCCTTCTCCGAAGGCCAATGCCAGAAAATCGAATGCTGCGGGAAAAAGAGTTGTCACTGAAACAAAATCCAGGAACAACTCATCAAAAGAAGAAACTGGTAAGCAAATAGTGGCTAACAAGACTTCAGATGGCAGTGGAACGTCATCGAAAAATGGAAATGCTGATATGTCTAAGCCATTAACTTCACTGGTGGAAGCTACAAGAAACATTCAGATAAATAGTAACTCCATCAAGCAAGAAAGTGTTGTCATTCCTATGCCTGTGGACTCAAGTGGCAATGACTCTCAGGTGCTTAAGGTCCAAAAGAAACATCGTAATGCTGGTCGTAAGAAAGAATCGGATTCTGCAAAACTTAAAAGGTTGCAGGGCAACAAAGAGGGAACACCCAAGTTCATTGGGGACTTAAATCTTCCACCGCTGCCACCACCGCCTGGGTTTGGTTTCGACAGTGAAAGCAGCCACAAATTTGGAAATCTTCCATCTCAACATGAGATTGGTTCAAGCAGTAAGAGCAACAAACCAGTTGGTGCTCTAGTCTGGTTGTCCTTGGTTGCTTCTGAAGACAAGAAAATGGATGCAAGGTTGCCTCAAATACCTACCCGCTTCTTAAGATTGGATGGTAGTTTAACTGTTTCCTATATTGAGAAGTATGTCATCAAGAAGCTTGGTCTTCCTAGCTATGCTGAGGTGGAGATCCAATTATGGGGTCAGCCAGTTTTGTCTTCATGCACAGTGCAACACTTATTAGAAATGTGGTTGCAAACAATGCCCAAGAATAAGAAGATTCATACAACTGTTGGAAGTTCTGCTGAGGATTTTGTTATGGTCCTTTCATATGGACTAAAGGCTTGA 1077 0.415 MYLLSAIHFFLFTSFCEVFINFVRLRYQIVLENYREDGKLQYFRDRIFPKKENEAKAPENVPLVPLAKTPEEVSAPSPKANARKSNAAGKRVVTETKSRNNSSKEETGKQIVANKTSDGSGTSSKNGNADMSKPLTSLVEATRNIQINSNSIKQESVVIPMPVDSSGNDSQVLKVQKKHRNAGRKKESDSAKLKRLQGNKEGTPKFIGDLNLPPLPPPPGFGFDSESSHKFGNLPSQHEIGSSSKSNKPVGALVWLSLVASEDKKMDARLPQIPTRFLRLDGSLTVSYIEKYVIKKLGLPSYAEVEIQLWGQPVLSSCTVQHLLEMWLQTMPKNKKIHTTVGSSAEDFVMVLSYGLKA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0708 358 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 32 356 - -
Lal12g0708 358 Gene3D - 239 337 - -
Lal12g0708 358 MobiDBLite consensus disorder prediction 163 212 - -
Lal12g0708 358 MobiDBLite consensus disorder prediction 105 133 - -
Lal12g0708 358 MobiDBLite consensus disorder prediction 59 133 - -
Lal12g0708 358 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 32 356 IPR044807 GO:0004842
Lal12g0708 358 MobiDBLite consensus disorder prediction 182 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0708 Lal-Chr12 5341956 5343928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0708 259 357 C3H Transcription Factor Family AT3G23060 42.000 1.29e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0708 K16277 - twl:120013799 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0708 12 5341956 5343928 Lal12g0708 12 5341956 5343928 ECH
Lal12g0708 12 5341956 5343928 Lal1g1906 1 21282004 21293960 ECH
Lal12g0708 12 5341956 5343928 Lal13g0811 13 5460658 5462631 LSH
Lal12g0708 12 5341956 5343928 Lal24g0628 24 4611273 4613190 LSH