Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0706 ATGGCAACAACTTTGCTGGAAAAGGAGCATGGATTGAACCTGAAGGAGACCGAGCTTTGCCTTGGTTTACCTGGTGGTGGTGGTGGTGAGGTGGAAACTCCAAGGGCCAATGGGAAGAGAGGGTTCTCTGAGACTATTGATCTGAAACTTAATCTTCCTTCTAAGGAAGATCTGAATGAGAGTCTGAAGAATGTCTCAAAGGAAAAGACCCTCCTTAAGGACCCTGCCAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACGTGATGGCACAAAAGGTTAACACTGAGGATTGCAATGAGAAGACAAGTTCAGGAACATTTGTGAAGGTTTCCATGGATGGTGCACCTTACCTACGCAAGGTGGACTTAACAATGTACAGATGCTACCAAGAATTAGCTGATGCTTTAGCCAAAATGTTTAGCTCCTTCACCATGGGTGATTATGGGACCCAAGGAATGATAGACTTCATGAATGAGAACAAGTTGATGGATCTTTTGAACAGTTCAGAGTTTGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTTCTGGGTGATGTACCATGGGAGATGTTTGTTGGGTCATGCAAGCGTCTTCGAATAATGAAGGGATCAGAAGCAATTGGGCTTGCGCCAAGAGCCATGGAAAAATGCAAACGCAGAAGCTGA 699 0.4535 MATTLLEKEHGLNLKETELCLGLPGGGGGEVETPRANGKRGFSETIDLKLNLPSKEDLNESLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNVMAQKVNTEDCNEKTSSGTFVKVSMDGAPYLRKVDLTMYRCYQELADALAKMFSSFTMGDYGTQGMIDFMNENKLMDLLNSSEFVPTYEDKDGDWMLLGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKRRS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0706 232 PANTHER AUXIN-RESPONSIVE PROTEIN IAA14 8 225 - -
Lal12g0706 232 Gene3D - 108 226 - -
Lal12g0706 232 ProSiteProfiles PB1 domain profile. 114 214 IPR000270 GO:0005515
Lal12g0706 232 SUPERFAMILY CAD & PB1 domains 110 213 - -
Lal12g0706 232 Pfam AUX/IAA family 36 223 IPR033389 -
Lal12g0706 232 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 225 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0706 Lal-Chr12 5313586 5316455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0706 109 217 B3 DNA Binding Superfamily AT2G46530 32.110 2.20e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal12g0706 AUX_IAA 4.3e-79 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0706 K14484 - gmx:100810762 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0706 12 5313586 5316455 Lal12g0706 12 5313586 5316455 ECH
Lal12g0706 12 5313586 5316455 Lal12g0181 12 1262558 1265160 ECH
Lal12g0706 12 5313586 5316455 Lal13g0808 13 5434055 5436519 LSH
Lal12g0706 12 5313586 5316455 Lal24g0627 24 4599132 4602584 LSH