Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal12g0706 | ATGGCAACAACTTTGCTGGAAAAGGAGCATGGATTGAACCTGAAGGAGACCGAGCTTTGCCTTGGTTTACCTGGTGGTGGTGGTGGTGAGGTGGAAACTCCAAGGGCCAATGGGAAGAGAGGGTTCTCTGAGACTATTGATCTGAAACTTAATCTTCCTTCTAAGGAAGATCTGAATGAGAGTCTGAAGAATGTCTCAAAGGAAAAGACCCTCCTTAAGGACCCTGCCAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACGTGATGGCACAAAAGGTTAACACTGAGGATTGCAATGAGAAGACAAGTTCAGGAACATTTGTGAAGGTTTCCATGGATGGTGCACCTTACCTACGCAAGGTGGACTTAACAATGTACAGATGCTACCAAGAATTAGCTGATGCTTTAGCCAAAATGTTTAGCTCCTTCACCATGGGTGATTATGGGACCCAAGGAATGATAGACTTCATGAATGAGAACAAGTTGATGGATCTTTTGAACAGTTCAGAGTTTGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTTCTGGGTGATGTACCATGGGAGATGTTTGTTGGGTCATGCAAGCGTCTTCGAATAATGAAGGGATCAGAAGCAATTGGGCTTGCGCCAAGAGCCATGGAAAAATGCAAACGCAGAAGCTGA | 699 | 0.4535 | MATTLLEKEHGLNLKETELCLGLPGGGGGEVETPRANGKRGFSETIDLKLNLPSKEDLNESLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNVMAQKVNTEDCNEKTSSGTFVKVSMDGAPYLRKVDLTMYRCYQELADALAKMFSSFTMGDYGTQGMIDFMNENKLMDLLNSSEFVPTYEDKDGDWMLLGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKRRS | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal12g0706 | 232 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA14 | 8 | 225 | - | - | |
Lal12g0706 | 232 | Gene3D | - | 108 | 226 | - | - | |
Lal12g0706 | 232 | ProSiteProfiles | PB1 domain profile. | 114 | 214 | IPR000270 | GO:0005515 | |
Lal12g0706 | 232 | SUPERFAMILY | CAD & PB1 domains | 110 | 213 | - | - | |
Lal12g0706 | 232 | Pfam | AUX/IAA family | 36 | 223 | IPR033389 | - | |
Lal12g0706 | 232 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 8 | 225 | IPR003311 | GO:0005634|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal12g0706 | Lal-Chr12 | 5313586 | 5316455 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal12g0706 | 109 | 217 | B3 DNA Binding Superfamily | AT2G46530 | 32.110 | 2.20e-08 | 52.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX/IAA | Lal12g0706 | AUX_IAA | 4.3e-79 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal12g0706 | K14484 | - | gmx:100810762 | 385.571 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal12g0706 | 12 | 5313586 | 5316455 | Lal12g0706 | 12 | 5313586 | 5316455 | ECH | |
Lal12g0706 | 12 | 5313586 | 5316455 | Lal12g0181 | 12 | 1262558 | 1265160 | ECH | |
Lal12g0706 | 12 | 5313586 | 5316455 | Lal13g0808 | 13 | 5434055 | 5436519 | LSH | |
Lal12g0706 | 12 | 5313586 | 5316455 | Lal24g0627 | 24 | 4599132 | 4602584 | LSH |