Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0705 ATGGAAAGCAAAGTAGCATATGAGAATGATCTCAACCTTAAGGCAACAGAACTTAGATTAGGGTTGCCAGGGAGAGAAGAAAATGAGCAAAAAACAAAGTTTGGTGTGAGAACCAACAAAAGATCATTGATTGAAACTTCTGAAGAGTGTGGTTCAAATGCTCCAAATGTGAACAATGATGCAACCCCTCCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAAAACAGTCTTCAAGACCCTGAGGTTGCTAGGATCTATGTGAAAGTTAGCATGGATGGAGCACCTTACCTCAGAAAGATAGATTTGAGGGTTTATGGAAGCTATCCACAACTCCTCAAAGTTCTAGAAAACATGTTCAAGTTAACCATAGGTGAATACTCAGAAAAAGAAGGTTACAATGGATCTGATTTTGCACCTACATATGAAGACAAAGATGGTGACTTGATGCTAGTTGGAGATGTTCCATGGGATATGTTTGTAACTTCATGCAAAAGGCTAAGAATCATGAAAGGATCAGAAGCAAGAGGCTTGGGTTGTGGTGTATGA 564 0.4043 MESKVAYENDLNLKATELRLGLPGREENEQKTKFGVRTNKRSLIETSEECGSNAPNVNNDATPPSKAKIVGWPPIRSYRKNSLQDPEVARIYVKVSMDGAPYLRKIDLRVYGSYPQLLKVLENMFKLTIGEYSEKEGYNGSDFAPTYEDKDGDLMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0705 187 ProSiteProfiles PB1 domain profile. 90 177 IPR000270 GO:0005515
Lal12g0705 187 Pfam AUX/IAA family 52 184 IPR033389 -
Lal12g0705 187 PANTHER AUXIN-INDUCED PROTEIN 10 184 - -
Lal12g0705 187 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 184 IPR003311 GO:0005634|GO:0006355
Lal12g0705 187 SUPERFAMILY CAD & PB1 domains 83 176 - -
Lal12g0705 187 Gene3D - 85 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0705 Lal-Chr12 5301882 5303525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0705 23 183 B3 DNA Binding Superfamily AT2G46530 27.684 9.55e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal12g0705 AUX_IAA 1.4e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0705 K14484 - jre:109004346 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0705 12 5301882 5303525 Lal12g0705 12 5301882 5303525 ECH
Lal12g0705 12 5301882 5303525 Lal12g0182 12 1277332 1278630 ECH
Lal12g0705 12 5301882 5303525 Lal13g0807 13 5412479 5414242 LSH
Lal12g0705 12 5301882 5303525 Lal24g0626 24 4578218 4579818 LSH