Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0703 ATGGTGGGATTGGAACTCATACCCATAGGCACAATCTTGGCTGTGCTAACAAATCAGGTGTTGAAAACAGCTCATGCAGCAGCTGATGTTCTTATTGGTAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGTTTGATATCGAGCCGGTGCTAAAGGAACTACAGCGTCAGGAATTGAACGAGTCTCAAGCTGCAAGGGTTGCCCTGGAGTCTCTTGAAGCAGATGTCAAAAAGGCGAATAACTTGGTTGAGAAGTATAGGAACCGCGGCCGTTTTTACTTGCTGGTTAAGTGCAGATCCATAGTGGAAGAGGTTGAACAAGTCACAAGGGATATTGGAAGGTCTCTAGCTGCACTTTCTATTGCAAATACTGAGGTCCTATCGAGAATTTCTGATCAGGTTAATAGGCTACAGAATGAGATGCAAAGGGTGGAATTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGAACAATGGACTTAGAGAACAGAAACTAGATCAGGCTTTTGCGAATGACATGCTTGAAGATATAGCAAGGGCAGTTGGGGTGCCAATAGAATCGTCGGAGATAGGCAAAGAGTTGGCCAGCATTAGGAGGGAAAAGGAAGAAGCTGCCAACAGAAAAGAAAGAGCTGAGTTTATTTTCTTGGAGCAGATCATTGAGTTACTTTCTCGAGCTGATGCAGCAAGGGATTACGAAGAACTTAAGAAACAATACTCCGAAAGGGTTCTGGTGATAGAGAGATATGATTCAAGGGAGAAATATATCCAACCACTGAATTCTTTCCTTTGTTGCATAACTGGAGCTGTTATGGTAGACCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCAGCAATTGAAGGTTGGTTTTATGATGGCAACATGACCGACCCGGAAACAAATGATGTTCTTGAAGATTTTACATTGAGGTCTAACATTCCACTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTTGTAATAAGGTCTATCAGGGAAAATCTATTATCAAACCCTGACTTATATGTTGAAGAATCCCTGAACCAAATTCAAGCTCTCACAGCAGAGAATTCTATTAACAAGGATTGGATTTCTATTGGAGGACTTACTGATATTATTATATATATCCTTGGGATCTCTGATAAGAGAGATGTGAAGATGAATATTCTAATTACTTTGAAGGATGCTGTAGAGGGCCATGTAAGAAACAAGGAGAAAGTGGTTCAATCACTAGGATGGGATCAAATTATTTCCTGCTTACGGAGTGACACTAGCGTTTCAAAGGAAGCGATAGATTTGCTATATGAGTTGCTTCAACATCGATCTGGTTGGAATGAATGCTACTGCAAAAAGCTCTCTGAGAATAGCAATGCAGTTCTTTTTCTTGTCACCCTTCTCAAGGGTCCTTCTGATAATTGGTCTTCAGCTGAGATTGCAGAAAAGATTTTGATGAAGCTTTTTGAAATAAATGAGGATACCATTATAACTGCTGCTAACTTTGGCTGGTATAAACCACTTATCGATCATATGATTCAAGGACCGGATTCAAGAATACCAATGGCGAAAGCTGTAGTTAGTATGGAGTTGGATGATTTAAACTTGGAACTTGTTGGCAAGGAAGGAATTATGGGTCCTTTGCTAGAAATGTTATCTGGAAATATTGAATCAAAAGAAGTGTCTTTATCAGCATTGGTTAAACTAGCAGGATGCCATGCCAACAAGGGAATCATTGCTGCATCAGGAGGTGTTCCTATTATTCTAGATTTAATGTTCTCTCCTCGAATCCGAACGTTCACTACTGTAAAATGCTCTGAAATCCTTGAGAAGCTTTCTTGTGATAAGGATGGAATTGATTTCTTTGTTGATGGTGAAGGGAAACAACTAGAGTTAGATTCCATTATGACCAACTTGCTAGCTCTTCAGCAGTGGTCCAACTCAGGCAATGACTTCCGCAAGCCTGCTCTACGTGCTCTTCTTGGAATTTGCAAGTTTGAGAGCGGTTTAGTTAAGAAGGCAATATTAGCAGTGAATGGTGTTTCTCTAATTCTTTCACTTCTCGATGATTCGGATTCGGAAATTCGCGAGACAGCTATAAACCTTCTCTTTCTTTTCTCTCAGCACGAGCCAGAAGGGGTAGTTGAATACCTCCTCAGGCCTAGAAGGCTTGAAGCGTTGATTGGTTTTCTTGAGAATGATGACAACAATGATGTAAGGATGGCAGCTGCAGGTCTACTAGCTAACCTACCGAAATCAGAAAGAGAACTAACTGTGAAGTTGATTGAATTAGGAGGACTTGATGCAATCATAAGCATTTTGAAAACTGGCACAATGGAAGCAAAAGAAAATGCTCTTAGTGCACTTTTCAGGTTCACTGATCCTACATATATCGAGTCGCAGCGCCATTTGGTTAAACGCGGAATATACCCTTTGCTTGTAGATTTTCTCAATAACGGTTCAGTCACAGCAAAGGCAAGAGCAGCAGCATTCATCGGCGATCTCTCTATGAGCACTCCAAAGCTCACAGTTGTTTCCAAATCACCTGGCTGCTGGTTTTTCAAGTCATCAAGAGTTCATTTGTGTTCAGCTCACGGCAGTGTATGCAGTGTGACTAACACATTCTGTCTATTAGAAGCAAATGCTTTGCCTGGTTTGATAAAGCTGTTGAAAGGTGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCCACATTGGTTTTGGAAGAGTTTCCTCAAAGGGGCGCTCACGTATTGCACGATTCTAATGCTATAAGACCCTTATTAGACATTTTGAACTGGGGGACTGATTCTCTCAAGGCAGAAGCTTTAGGACTATTGGAGAAGGTGTTTGTGTCAAAGGACATGGTTGAGTACTATGGAACAACAGCTAGGTTACGCCTAGTTGCTATCACTGGTATGAATATATATGGTGACGGTCACCTTAGGAGAAAAGCTGCTAAGGTACTATCGTTACTTGAACGTTACTCAAGGTCATCATCAGCTGTAGTATCTGGAATTTTGGAGTAA 3054 0.41 MVGLELIPIGTILAVLTNQVLKTAHAAADVLIGKESFKVLSKHLFDIEPVLKELQRQELNESQAARVALESLEADVKKANNLVEKYRNRGRFYLLVKCRSIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQLQIVDKLNNGLREQKLDQAFANDMLEDIARAVGVPIESSEIGKELASIRREKEEAANRKERAEFIFLEQIIELLSRADAARDYEELKKQYSERVLVIERYDSREKYIQPLNSFLCCITGAVMVDPVSLCTGTTCERSAIEGWFYDGNMTDPETNDVLEDFTLRSNIPLRQSIEEWRELNYCLVIRSIRENLLSNPDLYVEESLNQIQALTAENSINKDWISIGGLTDIIIYILGISDKRDVKMNILITLKDAVEGHVRNKEKVVQSLGWDQIISCLRSDTSVSKEAIDLLYELLQHRSGWNECYCKKLSENSNAVLFLVTLLKGPSDNWSSAEIAEKILMKLFEINEDTIITAANFGWYKPLIDHMIQGPDSRIPMAKAVVSMELDDLNLELVGKEGIMGPLLEMLSGNIESKEVSLSALVKLAGCHANKGIIAASGGVPIILDLMFSPRIRTFTTVKCSEILEKLSCDKDGIDFFVDGEGKQLELDSIMTNLLALQQWSNSGNDFRKPALRALLGICKFESGLVKKAILAVNGVSLILSLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLLRPRRLEALIGFLENDDNNDVRMAAAGLLANLPKSERELTVKLIELGGLDAIISILKTGTMEAKENALSALFRFTDPTYIESQRHLVKRGIYPLLVDFLNNGSVTAKARAAAFIGDLSMSTPKLTVVSKSPGCWFFKSSRVHLCSAHGSVCSVTNTFCLLEANALPGLIKLLKGEVHATAYEAIQTLSTLVLEEFPQRGAHVLHDSNAIRPLLDILNWGTDSLKAEALGLLEKVFVSKDMVEYYGTTARLRLVAITGMNIYGDGHLRRKAAKVLSLLERYSRSSSAVVSGILE 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0703 1017 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Lal12g0703 1017 Gene3D - 334 525 IPR011989 -
Lal12g0703 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1013 - -
Lal12g0703 1017 SUPERFAMILY ARM repeat 334 798 IPR016024 -
Lal12g0703 1017 SMART arm_5 408 447 IPR000225 GO:0005515
Lal12g0703 1017 SMART arm_5 716 758 IPR000225 GO:0005515
Lal12g0703 1017 SMART arm_5 876 916 IPR000225 GO:0005515
Lal12g0703 1017 SMART arm_5 578 616 IPR000225 GO:0005515
Lal12g0703 1017 SMART arm_5 760 800 IPR000225 GO:0005515
Lal12g0703 1017 SMART arm_5 920 960 IPR000225 GO:0005515
Lal12g0703 1017 SMART arm_5 538 577 IPR000225 GO:0005515
Lal12g0703 1017 SMART arm_5 674 714 IPR000225 GO:0005515
Lal12g0703 1017 SUPERFAMILY RING/U-box 249 330 - -
Lal12g0703 1017 Gene3D - 526 854 IPR011989 -
Lal12g0703 1017 Gene3D - 855 1007 IPR011989 -
Lal12g0703 1017 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lal12g0703 1017 Coils Coil 127 154 - -
Lal12g0703 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 333 IPR013083 -
Lal12g0703 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1013 - -
Lal12g0703 1017 SUPERFAMILY ARM repeat 652 1002 IPR016024 -
Lal12g0703 1017 Coils Coil 62 89 - -
Lal12g0703 1017 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lal12g0703 1017 Coils Coil 197 217 - -
Lal12g0703 1017 Gene3D - 9 124 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0703 Lal-Chr12 5289545 5295058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0703 264 974 U-box Gene Family AT1G76390 25.722 9.92e-39 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0703 - - gmx:100783638 1575.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0703 12 5289545 5295058 Lal12g0703 12 5289545 5295058 ECH