Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0696 ATGGAGGGAAAGGATAATTTTTGTGGTGGTGGGAATGCTCTTGCAGTTGTAAGTGGTGAAGCTCCAGATAGCTTCCATGTAGCTCCAAGAATTGAGAACAACTTGGATTTTTCAATGGCCACAGTGCCAGTGCCGGCACTGGCAACAGAGGGGAAGAAGAAGAGGGGGAGGCCTAGGAAGTATGGACCAGATGGGAAGGTGGCAGCTTTTCCTTTGTCTCCGATGCCGATTTCTTCGTCGATTCTGTTGACCGGAGAGTTCTCAGCTTGGAAAGGGGGTAGAGGAAGAACTGTTGACTCTATCAAAAAGTCAACATATAAGTATGAGGTTGAAAGTCCAGGACCAGATTTGATTTATGCTAGTGTATTAGAGTCTTTATGTAGGGTGGGGGCACTTTATCAATACCGGAGGTTCGACCGGTATACCGGAGTACCAGACCCCATACAGTTCACAGAGCAACTTTGTGGTCTACTTGGGGGTGTGACGGAGTTCCCAATTAAGAAGTTTTTTAAGATTAAATTGAAGGGAAAGAATATTAGAGAAATTTCTCTCTGGACTTTTATTAATACATTATTCTACTCCTTAATTCTCTATCTATTCATCAACTCATCTATGTATATTATAGGTGAGAGAATTGCATACTCAGTTGGTGCCAATTTCACAGCACATGTGCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTTGCTCAACAAGGATCATGTGCTATATGCATTCTCTCTGCGAATGGCTCAATTTCAAATGTTACACTTCGTCAACCAACTTCTTCAGGGGGTACTCTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAACGGAATTGCGAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCTGATGGCCGAGTGATGGGGGGTGGACTTGCTGGTTTGCTGATAGCTGCAGGTCCCGTGCAGGTTGTTGTGGGTAGTTTTCTTCCTGGTCACCGGCTAGAGCATAAAAACACGAAACAAAGGGTGGAGCATATATCAACTATTACCACTACACATATTAATCCTATCTCTATTGATGGGGGAATAAAATTCAGTTTTGGTGGATTTAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATAATTTCTTATAACAATGTTCAAGACTCTAGGAACTCATCTGCTGATGATAAAGAAGCTTTTCCCGAGGAGTCTAATCCAAGCCAATAA 1260 0.4286 MEGKDNFCGGGNALAVVSGEAPDSFHVAPRIENNLDFSMATVPVPALATEGKKKRGRPRKYGPDGKVAAFPLSPMPISSSILLTGEFSAWKGGRGRTVDSIKKSTYKYEVESPGPDLIYASVLESLCRVGALYQYRRFDRYTGVPDPIQFTEQLCGLLGGVTEFPIKKFFKIKLKGKNIREISLWTFINTLFYSLILYLFINSSMYIIGERIAYSVGANFTAHVLTVNAGEDVTMKIMSFAQQGSCAICILSANGSISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGIARSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHRLEHKNTKQRVEHISTITTTHINPISIDGGIKFSFGGFKPIMTPAAFQEENIISYNNVQDSRNSSADDKEAFPEESNPSQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0696 419 ProSiteProfiles PPC domain profile profile. 217 359 IPR005175 -
Lal12g0696 419 SUPERFAMILY AF0104/ALDC/Ptd012-like 219 338 - -
Lal12g0696 419 MobiDBLite consensus disorder prediction 398 419 - -
Lal12g0696 419 Gene3D - 221 357 - -
Lal12g0696 419 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 14 413 IPR039605 GO:0003680
Lal12g0696 419 CDD DUF296 223 335 IPR005175 -
Lal12g0696 419 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 14 413 - -
Lal12g0696 419 Pfam Plants and Prokaryotes Conserved (PCC) domain 222 335 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0696 Lal-Chr12 5197604 5203377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0696 208 349 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 72.535 1.49e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0696 - - gmx:100789179 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0696 12 5197604 5203377 Lal13g0797 13 5288974 5294217 LSH
Lal12g0696 12 5197604 5203377 Lal24g0618 24 4499313 4504503 LSH
Lal9g0763 9 5350412 5356304 Lal12g0696 12 5197604 5203377 PCT
Lal12g0696 12 5197604 5203377 Lal9g0763 9 5350412 5356304 PCT