Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0694 ATGGACTTTGATCCAAGCTTCTTATACCAACTTTCTGACATTTCTATGATTTTCCCGGAACATACTAGAAATTCAGAGATACCCATCATGGTTCCATTACAACAAACCTCTACTCTAGTACCACCACCACCAAAAAACATCTACTTTTATAGCCAAGACAATTTTCACCATTCTCAAAGTAACCATCCCTTCAATGGGGAATACCATGACCCTTGTTTTGTGAAAAAGAGTCCTTCTTCCTCTTCCATCAACCCTTTATCTATGATCCAAACACTTTCTTTAGGTAATTCATGCTCCAATTGGTCCCACAAAAATCTTGTCAATCCGAACTACCCTATAGGATTTGCACCAAGTAATGAGAAAATGGAAGTCTCACAGGAATACCTTATTAACAATTGTAATAGGTTCTTGGACATTCCCCAAGAAATTCCTATTCTTTATGATGCAATTTCACAGCCTCTGATGGGTCTTTCTCTTGCATCACCACATGATGCCTATGCACCAGTGGGAGTAAATCCTAGGCTTCAAGATGAGCTTTCACACATTGCTAGAGCTGAGAATGTTCATCAAGATACTAATCATAAAATTGTTGTTGGTGATAACAAGGAACAAAAGATTACCAACAAAGTCAAAGGCAAATGGACTCCAGATGAAGATAGGATTCTAGTGGAATCAGTGAGACGTTTTGGGCTGAAAAAATGGTCTCGTATTGCGAAGATGCTGAATGGCAGAGTCGGGAAACAATGCAGAGAAAGATGGTTCAACCATCTCCGGCCAAACATTAGGAAAGACTCATGGTCTGAAGAGGAGGATTTGATACTTATTGAAGCTCACAAAGGTGTTGGAAACAAATGGGCAGAAATTGCAAAGAGATTGATTGGAAGGACTGAGAACACTGTCAAGAATCATTGGAATGCAACTAAGAGGCGTTTGTACACAAAGAGGAGGGTCAACAAACACATCAATCCAAATGGAGAATTACTACTTAACTACATCAAGCAAGTTAGCAAAAATGGAAAATGA 1023 0.391 MDFDPSFLYQLSDISMIFPEHTRNSEIPIMVPLQQTSTLVPPPPKNIYFYSQDNFHHSQSNHPFNGEYHDPCFVKKSPSSSSINPLSMIQTLSLGNSCSNWSHKNLVNPNYPIGFAPSNEKMEVSQEYLINNCNRFLDIPQEIPILYDAISQPLMGLSLASPHDAYAPVGVNPRLQDELSHIARAENVHQDTNHKIVVGDNKEQKITNKVKGKWTPDEDRILVESVRRFGLKKWSRIAKMLNGRVGKQCRERWFNHLRPNIRKDSWSEEEDLILIEAHKGVGNKWAEIAKRLIGRTENTVKNHWNATKRRLYTKRRVNKHINPNGELLLNYIKQVSKNGK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0694 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 261 IPR017930 -
Lal12g0694 340 ProSiteProfiles Myb-like domain profile. 258 308 IPR001005 -
Lal12g0694 340 Gene3D - 264 326 - -
Lal12g0694 340 Gene3D - 210 262 - -
Lal12g0694 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 312 IPR017930 -
Lal12g0694 340 PANTHER MYB DOMAIN PROTEIN 100-RELATED 187 322 - -
Lal12g0694 340 Pfam Myb-like DNA-binding domain 214 271 - -
Lal12g0694 340 CDD SANT 213 257 IPR001005 -
Lal12g0694 340 CDD SANT 265 308 IPR001005 -
Lal12g0694 340 PANTHER MYB PROTEIN-RELATED 187 322 - -
Lal12g0694 340 SMART sant 210 259 IPR001005 -
Lal12g0694 340 SMART sant 262 310 IPR001005 -
Lal12g0694 340 SUPERFAMILY Homeodomain-like 208 304 IPR009057 -
Lal12g0694 340 ProSiteProfiles Myb-like domain profile. 206 257 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0694 Lal-Chr12 5183566 5186599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0694 202 335 MYB Transcription Factor Family AT4G18770 61.940 1.10e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g0694 Myb_DNA-bind_6 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0694 K09422 - lang:109346178 424.861