Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0690 ATGGTCGTTAGCGGAGGGAAGACTCTGAAGCGAATGAAGAGGAGAATCACTGCTGATTTCTATGACTTTCTCTCGTTCCCTTCGCCGTCCTTATCTGCGTCGGATAAATTTTCCGGCGGACCGTTCAGGAACAACGTGCGTTCCTTCCTAACAAAGCACGCGCTTCTCCCGCCGCCGTCGGCGCTGTTCCCTCATTTGATGACGTGGCAGATCCTCTTCCGTGTCGGTGATCTCACTGACGGAGGTCCCGAGTCGGGTCCGGCGGTGGTGTGCCTCGACGTGGTGGAGGAGGACGTTGCCAGATCCAGATCCGTGTATTGCGATCAGTGCCGAGTTTTCGGTTGGAGTGGCCACCCAGTGTGCGGAAAACGTTACCATTTTATAATTAAAGCTGATGGGAGCTCCATTGGTGGGTACCACAAGCCGTGCATGTGCTGTGGAGATATCCTGCATTTGTCAGAATCCAGGTGCAAGTCATGCAACCATGTTACAACTACTGATGATGTTGAAGACTGGGTGTATCACCAGTTAGAGAACACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGAAGCCATATTATGGATTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGTCTAGAGTACCGCTTGCTCCATGCCATTATGAAAGGACATCCCTGGTATGGTGACTGGGGCTATGAATTTGTCTCTGGCAGCTATTGTCTAACACAGGAAGCATATAATTCTGCTGTTGAAAGCTTATCCAATCTACCCTTATCGATCTTCCTCTCAAAAGGACAGAATCCCCACTCTCGTGTGAAGGACATGATCTCTTATTACCATTCATTGTCTGAGCATAAGCTTGTAAATATGAGGGACCTCTTTTGTTTTTTGATGTACTTGATTAATGATGCTCGGAAGACTGTTCCTAAGGTGGATGACATAAACTGCAAGAAGCGCCGACTTAATACTTCTGGATTTTCTGGTTCTTGGGAGAAGAACGACATTGAACGTGTGAAGGAAGCCATGCTCAGAGTGTTGCGAGCAGTGTCCGGGTCCAATTGGGTGAGCTGGCGTGCTGTCAGGGGTGCTGTCTGCAAGGTGGCCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGAAGGAAAAGTTGTCCATGCTGGGATGGTTGTTAATACCCGATGCAATCCTCAAACTGGAGCTTTAGAGTGCAGACTTGAGGCTGCAAATGATTCTTTCTATGGAATAGTAGCAAACAACAATTCCCCTGGTCTTAAGTATCCATCCGAAGAGAATCTCCTACAATGCTTGAAATATTTATATGAGTCTTTGCTTCACTCTCAGGTGATGCTAAGTTATTTCGCAGAAGAAACGAGGATTCTTGCATTGAGCTCTGCTCAGAAACTTCTCGACTGCAAGCAGTTTGTCAAAGCTTATAGTCCTGAGATGTTGCCTGTGTCAGATTTGTATAAAATACGCATCTCATGTCAGGTTGAACTTGTTGATGAATCAGAAGATCCTACAGCTAAAACTCCACCAGAATTAGTTGTGCTGCCCATGAATGCCACAGTGCATGACCTCAAGATAGAAGCAGCAAATGCTTTTCAAGATGTATATCTTATGTTTAGAAGATTTCAAGTTGATGAGCTACTCGCCTTTCGCGGTGTAGATGATTCCACCCAGGTCAAGCTCTTGCTAGGATCGAAGGAAACAGTTTGTGTGCGAGGAAAATGCATGGGGAAAAATGGATTGAGCAAGTTCCGAATGGAACGAGGACTTGAGAGGTGGACAGTAGATTGCAGCTGTGGGGCTAAAGATGATGATGGGGAAAGAATGTTGGCTTGTGATATATGTGGCGTGTGGCGGCACACCAGGTGTTCTGACATTCGTGATATCGATCCTGTTCCAGCGCGTTTTGTTTGCCCAAAATGTCTGAACTCTGACTCAAAAACTAAATCTAGTGGGCACTGTAAAGATGAGACTGTGACTAACGTTAGCACTGCTACTAGTTGCTTTGGAAAGGGCTTGCCAGTGCCTCCTGATGTTCGTTAA 2139 0.4642 MVVSGGKTLKRMKRRITADFYDFLSFPSPSLSASDKFSGGPFRNNVRSFLTKHALLPPPSALFPHLMTWQILFRVGDLTDGGPESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESRCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGSHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYEFVSGSYCLTQEAYNSAVESLSNLPLSIFLSKGQNPHSRVKDMISYYHSLSEHKLVNMRDLFCFLMYLINDARKTVPKVDDINCKKRRLNTSGFSGSWEKNDIERVKEAMLRVLRAVSGSNWVSWRAVRGAVCKVASPELLDYCLGELEGKVVHAGMVVNTRCNPQTGALECRLEAANDSFYGIVANNNSPGLKYPSEENLLQCLKYLYESLLHSQVMLSYFAEETRILALSSAQKLLDCKQFVKAYSPEMLPVSDLYKIRISCQVELVDESEDPTAKTPPELVVLPMNATVHDLKIEAANAFQDVYLMFRRFQVDELLAFRGVDDSTQVKLLLGSKETVCVRGKCMGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIRDIDPVPARFVCPKCLNSDSKTKSSGHCKDETVTNVSTATSCFGKGLPVPPDVR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0690 712 SMART PHD_3 628 674 IPR001965 -
Lal12g0690 712 CDD PHD_MMD1_like 628 673 - -
Lal12g0690 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 681 IPR013083 -
Lal12g0690 712 PANTHER OS01G0877500 PROTEIN 1 685 - -
Lal12g0690 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 685 - -
Lal12g0690 712 Pfam PHD-finger 629 675 IPR019787 -
Lal12g0690 712 ProSitePatterns Uncharacterized protein family UPF0054 signature. 185 195 IPR020549 -
Lal12g0690 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0690 Lal-Chr12 5095862 5101935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0690 87 673 PHD Transcription Factor Family AT5G22260 29.206 2.46e-80 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal12g0690 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0690 - - gmx:100818189 1167.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0690 12 5095862 5101935 Lal13g0785 13 5204704 5216295 LSH