Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0678 ATGGCAATGGTTGAACCTCTTACTCTGAGGAATAAGATCAAAGCTCTTTGCACTTATGGTGAGGATGGTTGGTCTTATGCCATTTTCTGGAGCTTCCATCCACAGAATCCATTGTTGTTGACTGTAGAAGATGCATACTATGAAACACAATTGGGACAAGATATTGCTAACATGCATCCCCAGACTCACTTATCTGGCAAAGGAATTGTTGGTATAGCTGCTTTTACTGGTAAGCACATATGGGTGCACTCAAATGGCCAAAACCAGGATTGGAATTTGTCTAAGCATAATATTTATGAGGAGGATTTTGGATTGTATCAAGAATTCTCATGTGGGATAAAGACAATTGTGGCCATACCTATCAAATCATGGGGAGTGGTACAATTTGGGTCCAAAAAGAAGATTTTGGAAAGAGTAGAATTTTTGGACCAAACACAAAGATTATTGGTGGAGATGGATAATGTGGGTATGGTTAACATGTCAGGAAATGCAGTTTCACCACTGGATTGTGAAAACTACGATTTAAATAACTTATTGGCTTCATTTTCTTCTGAAAATTCACACGACTCGAATCTTAAATATGCTCATGGTGAAAACTCAGAAGACCTAATGAGAAAGGTTTTTTCTTCTGAAAGTGTCAACAATACCTATCCTTATCTATATAATATTTACCAAGAAGGGATGATTTTATTCAATGTTGATTCTTGTGTTGGTGACCAATTGAATGCTACCAAAGAAGCTCAAGTTGCATTATCTGATAGGGATATTACTGATGTGCTTGTGAGGCCTAACTCTTCTATGAACAGCCTAATTTATAATGACACTGATTTTGATGAATCGAATGGTGAACTTTCTTGTTTTGATTCATTCGGGCAACAATTCATATCAGAAGATGAAAATGCATTTTCTTGTAGTGAACTTGCTGTTCAGGATTCACCATTGTCTTCAATGTACAGTATGAATATAGGGGCATGCCAAGAAAATTTGCAAAACTTACTGGCTAACCAACAATCTTTCCAATCTGGTGTTGTGACGCAAGTCGATTTCCCATCAAGTTCAAACACACTGCATGAACTCTCGAAGAACATAGAGGCAGTTGATATGTCCGAAGAATTTTTGAACTTCAGCTCCTTGGATGATCTTTGCCAGTTCTTTGCTCCTTCTCCAGATGATAATAACTTCAGAACAATTACTGCATTTGATGACACCCCTTCTGAACTAAATGAGTTTAATCCTACTCCATTTGGTTCGGTCGGATGTAATATTCCAATGATGTGCTCAGCTGGTGCTAAATCCATAGAAACATCTGCAGTTATGCAAGGTCCTGAAAATAGTTTCTTGGATTTCAACTGTGATCAAGCAAATGAATGGTGGGAGAATATGTCTACACCAGCACTGAGTCCTGCTATCTTTTCTGAATGCGTATCCGAGTTAAACACTTGTACACTGACTGGCATGCAGAACGGATTATTATTCTCAGAGTCTTCGACTGGTGAAGCAAGTTACAATCCTCTGAATAGTTCTAATTTTGAGTATGAGTTTTCTCCGAATAAAAGCCAATTGGTAGAATTTGCACCTGTAAATATAAATCCAATACAGTTTGGAAATCTTCCTAGGCCTGCTGAGGCTACATCAGACTTGATGGGCTCCATTTCTTACTTAGAGAAGACAAACAATCTCGTAATGAAGAAAGATACATTACCAAAATTGCAGGTACCTAGATGGACTGATGATGGCCATAGCACTAATATTGGAAAGTCTGTTTATGCACACTATCAGACTCAAAAGCCAGAGGAGGGTACAATAAAGCGCTCCAAAAAAAGGGCTAGGCCAAAGGAAAGTACTCAGCCGCGACCGAAAGATCGCCAGCAGATCCAAGACTGCATTAAAGAGTTGAGAGGGATCATCCCCAATGGTGAAAAGTATAGCATTGATTCACTGTTGGAGCAAACCCACAAATACATGCATTACTTACAAAGTGTAACCAAGTTTGCTGATAAGCTACAAGAACCGGTTGAGCTGAAGGCAAATGAAGTGGTTCTAGAAGACAGTAATGTAGGAGATAACAAAAACCATGGTGTTACATGGACATATGATTTGGCAAGTCCAACACTGGAATGTCCAATTAGAGTGGAGGATATGAACACACCTGGCCAAATGCTTATAGAGATGTTTTGTGAGCAGCAAGGTTTCTTCCTTGAGATAGCTGGGGAAATTCAGGATTTTGGGCTGAATATCTTGAAAGCAAAGATGACACTTAGGAAGAACAAATTATGGGCACTTTTTATAGTTCAGGTTTACATTGTGCAACAGGCAAAGAGACATTTGACAAGGATAGATGTATTTTACTTCCTTTTCAATCTTCTACACAAAACACACACATCCAGAATGGACTCAGCTAATAACATTGCAAGTGTTATTGATCCTACTGATTCTTGGCTTAGACAATCACCAGAAAAACAGTGA 2466 0.3869 MAMVEPLTLRNKIKALCTYGEDGWSYAIFWSFHPQNPLLLTVEDAYYETQLGQDIANMHPQTHLSGKGIVGIAAFTGKHIWVHSNGQNQDWNLSKHNIYEEDFGLYQEFSCGIKTIVAIPIKSWGVVQFGSKKKILERVEFLDQTQRLLVEMDNVGMVNMSGNAVSPLDCENYDLNNLLASFSSENSHDSNLKYAHGENSEDLMRKVFSSESVNNTYPYLYNIYQEGMILFNVDSCVGDQLNATKEAQVALSDRDITDVLVRPNSSMNSLIYNDTDFDESNGELSCFDSFGQQFISEDENAFSCSELAVQDSPLSSMYSMNIGACQENLQNLLANQQSFQSGVVTQVDFPSSSNTLHELSKNIEAVDMSEEFLNFSSLDDLCQFFAPSPDDNNFRTITAFDDTPSELNEFNPTPFGSVGCNIPMMCSAGAKSIETSAVMQGPENSFLDFNCDQANEWWENMSTPALSPAIFSECVSELNTCTLTGMQNGLLFSESSTGEASYNPLNSSNFEYEFSPNKSQLVEFAPVNINPIQFGNLPRPAEATSDLMGSISYLEKTNNLVMKKDTLPKLQVPRWTDDGHSTNIGKSVYAHYQTQKPEEGTIKRSKKRARPKESTQPRPKDRQQIQDCIKELRGIIPNGEKYSIDSLLEQTHKYMHYLQSVTKFADKLQEPVELKANEVVLEDSNVGDNKNHGVTWTYDLASPTLECPIRVEDMNTPGQMLIEMFCEQQGFFLEIAGEIQDFGLNILKAKMTLRKNKLWALFIVQVYIVQQAKRHLTRIDVFYFLFNLLHKTHTSRMDSANNIASVIDPTDSWLRQSPEKQ 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0678 821 CDD ACT_UUR-ACR-like 721 765 - -
Lal12g0678 821 MobiDBLite consensus disorder prediction 597 624 - -
Lal12g0678 821 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 59 147 IPR025610 -
Lal12g0678 821 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 7 810 IPR043561 GO:0003700|GO:0006355
Lal12g0678 821 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 609 658 IPR011598 GO:0046983
Lal12g0678 821 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 7 810 - -
Lal12g0678 821 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 622 664 IPR036638 GO:0046983
Lal12g0678 821 MobiDBLite consensus disorder prediction 583 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0678 Lal-Chr12 4976612 4981404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0678 571 808 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 41.597 1.94e-48 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0678 - - lang:109336274 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0678 12 4976612 4981404 Lal13g1011 13 7422758 7434722 LSH
Lal12g0678 12 4976612 4981404 Lal24g0775 24 6016215 6024186 LSH