Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0670 ATGGGGACCGAGTTCATGCGAATATGTGTTAAAGAAGATAATGATGACTTTCCATCTGTTCCACCAGGTTTTGAGTCATATACAGCTTTCTCACTAAAGAGAGTAGAAGACAATGAGAAACAGAATGATAAAAATATGACCAGTTGTTCAGCCTCTACTAATGCTTATGAGTCACCGTCCACTAAGGTGGAAACTGATGTTCATGTTAGTAATACTGCAAGGGTTCCTAGGACTCTCCGACGAAGAGCATGTATTAACTATGGACGATATGAGAATTGTTCAGAGGAAGAATCTGATTCTGAATGTCGTGATCAAAACTTCTCCTCAAGACCTTGTCTACCTAGGGGAGTTATCCGTGGATGTCCTGATTGCAGTAACTGTCAAAAGGTTGTTGCCAGATGGCGACCAGAAGATGCTCGTAGGCCAAATCTCGAAGAAGCTCCTTCTTTCTATCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGAGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCATCTTCTTGGAAACCCCCTTGTCCTCTTGAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCTACCCGTGTTCAGAGGGTTGACAAACTTCAGAATCGTGGTTCAATTAGAAAAATGTCAAGGATGCAAAGTAATACGAAAAGGAAAAGGAGAAGATGCACCCGAATAGAAATGGATAATGGCACTGGAAACGTCGGATTTTGTGAGGCTGAAAGTTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATTCAGATGATTTTAAGACCAAATACTTCAGAAATTATGAGGATGTATATCATCCGGGATCAAATACAACAGTTTCAAATGGTAACTCAGAGCCATCTGTGGAGAACATTGAGGGGGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTTCCTAGAAAGCCTAGCCATATCTATTCTGATTCAGACGAACAGTACATCAAATCGGGCTGGAATTTAAATAACTTTGCTAGGCTACCTGGATCTCTACTCTCTTATGAGACCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCACGTGGAAGATCACCACTTATATTCATTGAATTATATGCATCGGGGTGCTCCGAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGTAAGTTGGAAGAGGCTATGAGAAAGCATTTACCAGAGCTTTTTGAACAACAACCTGATTTGCTTCATAAACTGGTCACTCAGCTTTCTCCTTCAATCCTTAAGTCTAAAGGAGTACCAGTTTATAGATGTGTCCAAAACCCTGGAGAGTTTGTTCTTACATTTCCTCGAGCCTACCACTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTTAATGTAGCTCCTATTGACTGGCTGCCTCATGGACATATTGCTATCGAGCTGTACCGGGAGCAGGGGCGCAGAACTTCTATATCCCATGACAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTACGAGCACAGTGGGAGCTTAATTTGCTGAAGAAGAATACTTCAGATAATATACGATGGAAAGATGTCAGTGGAAAGGATGGCCTCCTGGCAAAAGCATTCAAGGAACGTGTTGAGATTGAACGGGTAAGAAGGGAATTTCTTTGCAGATCTGCAAAGGCATTGAAAATGGAGAGTAGTTTTGATGCTACGAACGAGAAGGAATGCATTATTTGCCTTTTTGATTTACACCTCTCTGCAGCCGGTTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCGAAGCAGTTTTGTTCTTGCAGTTGGGATTCCAAATTCTTCCTCTTTCATTATGATATTAGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTATATAGGTGGGCAAAATTAGATCTTGGTCTGGCATTAACTTCTCATGTCTCACCAGTCAAGGCAACAATACACACAGAATTGAGATCGGATTCAACAAATTTGTCTCATTCTTCTAGGGTCAATGTGCATAAAGATTTGGCTTTGCATCCATCAAATAAATTAATTGATGATTATATTATGAGTTCAAATCCTGGAAACAATCTCTTCACTCGCGAGGACAAGTTTGCGTACATCTACCCTCCCCAGACCCCACTAGGTGGGAGCCTCATGCATTGGGCCACGACAGATGTCCCAAGAAAGAATCAAGCACATGCAGCAAAAAGCAAAGATCAGAGCTATCTTCAACAGAGGAAAACAGCAGAAGATGTGTCTTCAATTCACATGAAGCAATTGTTAACAAATAATAGCTCAAAATCTACATGTGAAATGGCTAATCATAAAAACTCTGTTAACATAGAAGGATCTCTTATTTGCGGATCAAAGCTGAGAACCCCTGGTTGTCAATTGTCTAAAAAGGAACCGCCAAGTGAGAAAGGTTCACTTTACAGACATGACAATGTGATACTTCTTAGTGATGATGAAGGTGATGAAATTAAAATGCCGGATTCAAATAGAAGGAAGGAAACTTCTTGTGTGGTTACAGGTTCTAGAAATAAAGCAAGCCCATGTAACAATATAGAAAACACCAACCTGACCATCTCTGTGACAGATGTTGCTGTGATGGGTGAAAAGAATGGTCCTGCATTGCCTCATGGAGATTTGAGTTCTTGTTCTGCTCAGCTTTTGCATGTGAAACAGGAATGCTATGAAAACAGAGGACCAGCTCTTACTTTTAACACAGTAGATCTTAATTACCATATAGGTCATACAACTGCAGAATCAGTTAGGAATATTCCAGTTTCTTCAACAGGAGAGGCCAGCCATCATTGTTTGGAAAGTTCAGAGTGTTCTTCTCTGAACCCACAACAGTCTGGCACTATCAAGGCCAAGAATGAGGAGAATCGTGAAACGTTAGGAGGATTTCCCACTTCTAATGTAGCTGACAATTTAAGAGCTGTTAATGTAAACCTTTCTCGCAGTCTAAACAATTTGGAAAGGAATTCTCGTCAGAAAGGTCCTCGTATTGCCAAGGTTGTCCGGCGTATCAACTGCAATGTTGAACCTTTAGAATTTGGAACTGTGCTTCCTGGAAAGTCATGGTGTAGCAGTCAGATTATATTCCCAAGGGGATTTAGAAGCCGTGTCAGATACATAAGTGTTTTAGATCCATCCTCTACTATGTGTTATTATATTTCAGAAATTCTTGATGCGGGACGTGATGGACCCCTATTTATGGCCTTTCACCCCTGTGATTTAAATTTGTTGCCTAGTGACCATGAGGTCACAGCTTTGAGGCTTAGTGTTACAGAGAATCTTTTGCCCCTTTTACCTAAGCCCTTTGAGATGGATATTCTGCTTAACTACAAGCCAGTCTGGGTTTCCACCGAAAATTGCCCAAGTGAGGTCTTCATTCATGTTTCACCTGCAAGATGCTGGGAACTTGTAAGAGAGAGAGTGAATCAAGAGATCGCAAAACAACACAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCCTCTCCAGAAATTGTGCAGGTTATTGAGGCACTAGATCGAAATCGAGTTTGTAATGAATATTGGGATTCCCGACCCTACTCTCGGCCTCAAGGGCAGATTTCCCAAGCTCACCAAACCAATATAAATGGTGGAAATGGTGAAGGGGTCCTCATGAATCAGCACTTGCCTGTTGAAGGTGTCGCAGCATTAAGAAGCCTATTTAAAAAGGCCAATGCTGAAGAATTGAACTCATTGTGCAAAATTCTTAGTGACAATAATCCGGCGGGTGGCCGAATGCAAATTGCGCAACTTCTCAATGAAGAGATTCAAAAATCACAACCCTCTTCCTAG 4002 0.417 MGTEFMRICVKEDNDDFPSVPPGFESYTAFSLKRVEDNEKQNDKNMTSCSASTNAYESPSTKVETDVHVSNTARVPRTLRRRACINYGRYENCSEEESDSECRDQNFSSRPCLPRGVIRGCPDCSNCQKVVARWRPEDARRPNLEEAPSFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLEEKSIWEGSKFATRVQRVDKLQNRGSIRKMSRMQSNTKRKRRRCTRIEMDNGTGNVGFCEAESFGFEPGPEFTLETFQRYSDDFKTKYFRNYEDVYHPGSNTTVSNGNSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPRKPSHIYSDSDEQYIKSGWNLNNFARLPGSLLSYETSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHRGAPKMWYGVPGKDACKLEEAMRKHLPELFEQQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPIDWLPHGHIAIELYREQGRRTSISHDKLLLGAAREAVRAQWELNLLKKNTSDNIRWKDVSGKDGLLAKAFKERVEIERVRREFLCRSAKALKMESSFDATNEKECIICLFDLHLSAAGCRCSPDRYACLDHAKQFCSCSWDSKFFLFHYDISELNILVEALEGKLSAVYRWAKLDLGLALTSHVSPVKATIHTELRSDSTNLSHSSRVNVHKDLALHPSNKLIDDYIMSSNPGNNLFTREDKFAYIYPPQTPLGGSLMHWATTDVPRKNQAHAAKSKDQSYLQQRKTAEDVSSIHMKQLLTNNSSKSTCEMANHKNSVNIEGSLICGSKLRTPGCQLSKKEPPSEKGSLYRHDNVILLSDDEGDEIKMPDSNRRKETSCVVTGSRNKASPCNNIENTNLTISVTDVAVMGEKNGPALPHGDLSSCSAQLLHVKQECYENRGPALTFNTVDLNYHIGHTTAESVRNIPVSSTGEASHHCLESSECSSLNPQQSGTIKAKNEENRETLGGFPTSNVADNLRAVNVNLSRSLNNLERNSRQKGPRIAKVVRRINCNVEPLEFGTVLPGKSWCSSQIIFPRGFRSRVRYISVLDPSSTMCYYISEILDAGRDGPLFMAFHPCDLNLLPSDHEVTALRLSVTENLLPLLPKPFEMDILLNYKPVWVSTENCPSEVFIHVSPARCWELVRERVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPEIVQVIEALDRNRVCNEYWDSRPYSRPQGQISQAHQTNINGGNGEGVLMNQHLPVEGVAALRSLFKKANAEELNSLCKILSDNNPAGGRMQIAQLLNEEIQKSQPSS 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0670 1333 MobiDBLite consensus disorder prediction 39 62 - -
Lal12g0670 1333 ProSiteProfiles JmjC domain profile. 356 519 IPR003347 -
Lal12g0670 1333 ProSiteProfiles FYR domain FYRC motif profile. 1158 1248 IPR003889 GO:0005634
Lal12g0670 1333 SMART cupin_9 356 519 IPR003347 -
Lal12g0670 1333 Coils Coil 1019 1039 - -
Lal12g0670 1333 Pfam F/Y-rich N-terminus 1062 1106 IPR003888 GO:0005634
Lal12g0670 1333 ProSiteProfiles FYR domain FYRN motif profile. 1050 1109 IPR003888 GO:0005634
Lal12g0670 1333 SMART fyrc_3 1165 1256 IPR003889 GO:0005634
Lal12g0670 1333 Pfam JmjC domain, hydroxylase 386 502 IPR003347 -
Lal12g0670 1333 Gene3D - 1057 1242 - -
Lal12g0670 1333 SMART fyrn_3 1064 1109 IPR003888 GO:0005634
Lal12g0670 1333 PANTHER LYSINE-SPECIFIC DEMETHYLASE 82 738 - -
Lal12g0670 1333 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1164 1329 - -
Lal12g0670 1333 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1031 1118 - -
Lal12g0670 1333 PANTHER JUMONJI 14-RELATED 82 738 - -
Lal12g0670 1333 PANTHER JUMONJI 14-RELATED 1164 1329 - -
Lal12g0670 1333 PANTHER JUMONJI 14-RELATED 1031 1118 - -
Lal12g0670 1333 Gene3D Cupin 132 503 - -
Lal12g0670 1333 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Lal12g0670 1333 MobiDBLite consensus disorder prediction 987 1015 - -
Lal12g0670 1333 Pfam F/Y rich C-terminus 1165 1244 IPR003889 GO:0005634
Lal12g0670 1333 Pfam C5HC2 zinc finger 609 659 IPR004198 -
Lal12g0670 1333 SUPERFAMILY Clavaminate synthase-like 354 546 - -
Lal12g0670 1333 MobiDBLite consensus disorder prediction 44 62 - -
Lal12g0670 1333 Pfam jmjN domain 148 181 IPR003349 -
Lal12g0670 1333 SMART JmjN_1 146 187 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0670 Lal-Chr12 4894214 4904880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0670 1 1327 JUMONJI Transcription Factor Family AT1G08620 50.444 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal12g0670 JmjC 1.2e-45 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0670 12 4894214 4904880 Lal13g0761 13 4984806 4993291 LSH