Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0666 ATGGGTTCTATGAACTGGTTGGGTTTCTCTCTTGCTCCTCATGAAGAAGATAACCACTCTCAAACGGTGCCACAAAACCTTGGCTTCAACCCTGATGCCACTGATATATCTCCTTCTTTTGCTATCTTTGAAGATCTCAACACAAATAACACTCACCCTCACAGCACTCCTCAAGATTGGAACACAAAGGGTTTGGGAAGCAACTCATCAGAGTATAACTACTACAACAACAACAACAGCCAAAACATGCTATTGGGAATTTCATGCAACCAACAACAACATCCAAAACTTGAAAACTTTCTCGGGCAACAATCTTTTGGTGATAATAATCTTAACAACACAACATCCTCCTCCGGTGACTTAATGTTCCAAAACTGTTCTTTAAAACCTCCATCAGGTAGCGGTGAAGGCGGTGTCGACGGTGGTGGTAGTCCAAGGAACAATACTTCTATAGGGCTTTCAATGATAAAGACATGGTTAAGAAACCAACCACCACAATCAGATTCAGCAAATATGAAGAGTAGTACTGTTTCACAGTCAAGTTCTTCTGTAGCACTGCCTCTTCTTACATCAAATAATGTGGATAATGGAGAGAGTTCCTCCTCTTACAATAATAAGCATAACCCTAAGACTTCTTCTGCAGTCGTCATTGACCAAAGTGGTGATGCTGTTGAAAATGCAGTGCCCAGAAAATCTGTTGACACATTTGGACAAAGAACTTCTATATACCGGGGTGTGACTAGGCATAGATGGACAGGTAGATATGAGGCTCATTTATGGGATAATAGTTGTAGAAGAGAGGGTCAAACTCGCAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAAGCAGCTAGGGCATACGATTTAGCTGCCCTTAAGTATTGGGGAACAACTACTACAACAAATTTTCCTATTAGCAATTATGAGAAAGAGTTGGAAGAAATGAAGCACATGACAAGACAAGAATACGTCGCTTCATTGAGAAGGAAAAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACAAGGCATCACCAACATGGTAGATGGCAAGCCAGGATTGGAAGAGTTGCTGGTAACAAAGATCTCTATTTGGGAACTTTCGGAACCCAAGAAGAGGCAGCAGAAGCATATGACATAGCAGCAATAAAATTCCGAGGACTGAATGCAGTTACAAACTTTGACATGACCAGATACGATGTTAAGAGCATTCTTGAGAGCACCAATTTACCCATTGGTGCTGCTGCCAAACGTAATTTGAAGGATAATAATCTTGATCTCACTATTACTACTCTTGATCATAATAATATTAATGCACCTCACATAAGGTCATTATCATCAGAGGAAAATAACATGAGTTCTAACCTTAGTTATGGTGCAACAACCTTATACCATGGTTGGCCTTCTCTTGCATTTCAACAACCTCAACTACCTTATACCCAGGTCCATAATAATTATCCTACTTATGGACATAACTCACAGAAGTTTTGGTGCAAGCAAGAACAAGATCCTGAAGATCATGCCTCTCAACAAAATTTTCAAGATATTCACTACCAACTTCAGTTAGGGAGTAATAATAATAATACTCATAATTTCTTTCAATCTGATTCTGGGTTGAGTAGTATCATGAGCATTGGTGGTTCTACTTCTATGGATAACAATAGCTCCGGATCTAGCTCTGTCATTTATGGTGGTGGTGATGGTAATAATGGTTGTTATGGAAATGGTAGGGGCTACATGATTCCTATGTCTACTTCTACCTTCAATATTGCTGATGATGATGGTAACCAAAACCATATTAGCAATGGTTATGGTGATGATAATAATGAGAAGGTGGTTAGTTATGAAAATGGTTATGGTTGCAGTACTAGTGATCCTTATAATCATGCAAGAAACTTGTATTATCAACAAGCATCTGCAGAAGCATGCAATACTTGGGTTCCTACTGCTATTCCAACTCTTGCACCAAGGTCTAACGATGTGGCTCCATGCCATGGCACTCAACCCTTCACATTATTGCATGAATAG 2040 0.3975 MGSMNWLGFSLAPHEEDNHSQTVPQNLGFNPDATDISPSFAIFEDLNTNNTHPHSTPQDWNTKGLGSNSSEYNYYNNNNSQNMLLGISCNQQQHPKLENFLGQQSFGDNNLNNTTSSSGDLMFQNCSLKPPSGSGEGGVDGGGSPRNNTSIGLSMIKTWLRNQPPQSDSANMKSSTVSQSSSSVALPLLTSNNVDNGESSSSYNNKHNPKTSSAVVIDQSGDAVENAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKSILESTNLPIGAAAKRNLKDNNLDLTITTLDHNNINAPHIRSLSSEENNMSSNLSYGATTLYHGWPSLAFQQPQLPYTQVHNNYPTYGHNSQKFWCKQEQDPEDHASQQNFQDIHYQLQLGSNNNNTHNFFQSDSGLSSIMSIGGSTSMDNNSSGSSSVIYGGGDGNNGCYGNGRGYMIPMSTSTFNIADDDGNQNHISNGYGDDNNEKVVSYENGYGCSTSDPYNHARNLYYQQASAEACNTWVPTAIPTLAPRSNDVAPCHGTQPFTLLHE 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0666 679 Pfam AP2 domain 341 391 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 Pfam AP2 domain 242 297 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 MobiDBLite consensus disorder prediction 162 211 - -
Lal12g0666 679 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 589 - -
Lal12g0666 679 SMART rav1_2 341 405 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 SMART rav1_2 242 311 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 ProSiteProfiles AP2/ERF domain profile. 341 399 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 SUPERFAMILY DNA-binding domain 241 307 IPR016177 GO:0003677
Lal12g0666 679 SUPERFAMILY DNA-binding domain 340 400 IPR016177 GO:0003677
Lal12g0666 679 CDD AP2 241 307 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 PANTHER BNAC02G44180D PROTEIN 5 589 - -
Lal12g0666 679 ProSiteProfiles AP2/ERF domain profile. 242 305 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 MobiDBLite consensus disorder prediction 102 150 - -
Lal12g0666 679 CDD AP2 340 399 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 PRINTS Ethylene responsive element binding protein signature 381 401 IPR001471 GO:0003700|GO:0006355
Lal12g0666 679 Gene3D AP2/ERF domain 341 401 IPR036955 GO:0003700|GO:0006355
Lal12g0666 679 Gene3D AP2/ERF domain 242 307 IPR036955 GO:0003700|GO:0006355
Lal12g0666 679 MobiDBLite consensus disorder prediction 102 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0666 Lal-Chr12 4861413 4866168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0666 150 480 AP2-EREBP Transcription Factor Family AT5G17430 62.573 4.48e-131 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal12g0666 AP2 3.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0666 K09285 - qsu:111984882 660.988