Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0650 ATGGCACATCGGTGGTGGACTGACTCAGTGGGTCACGGCGTGGTGGATAACTCAACCAACTCTCCCCCTATGAAAAAACCTGATCTCATGGGTTTCTCCATGAACAACAACAATACAGCTTTAAACCACGGTGGTGTTGGATTAAGGGAAGAAGAAGAAGAAGAGAAAGAAAACAGCGAGGAGCCCAAAGAGGGAGCAATTGAATTAGCCACCACGCGCCGCCCTAGGGGCCGTCCAGCCGGTTCAAAGAACAAGCCAAAACCGCCAATATTTGTGACAAGAGAAAGCCCTAATGTGCTCCGAAGCCACGTCATGGAGATAGCAAATGGTGCTGACATTGCTGATAGCTTGATTCAGTTCGCAAGAAAGCGTCAGAGTGGTGTTTGTATTTTAAGTGGCAGCGGGAATGTTGTTAATGTCACATTGCGTCAGCCCATGGTGTCAGGTGCAGTCGTGGCACTACACGGCCGATATGAGATACTTTCTCTTACCGGCTCGTTTTTGCCAGGACTGTCTTCACCTGACACTATTGGGCTGACCATTTACCTTGCTGGAGGGCAAGGACAGGTTGTTGGGGGAGGGGTGGTGGGCCCAGTGGTGGCGGCAGGACCAGTTATGATAATGGCAGCTACATTTTCGAATGCAACCTACGAGAGGTTGCCGTTGGAAGAGGAAGATGAAGAAGGAGAGGGATCGTCACCGGGTGGGAAGAAGCCCGCGAGAGTTTCCATCAGAGATGGTGGTACATTGTTGATTCCAATGTATAATAACAATGTTTCTCCGCCAAATTTGGCCAGTACTCTTACAAATGGGCAACCACATTTGAACTCTGAAGTTGGTTATTCTACTTGGCCTCATGGTCATGAATACTTGAGGAAAAGAAAAGTTGTTCTCCATTTTTATACGGCCTAA 912 0.4846 MAHRWWTDSVGHGVVDNSTNSPPMKKPDLMGFSMNNNNTALNHGGVGLREEEEEEKENSEEPKEGAIELATTRRPRGRPAGSKNKPKPPIFVTRESPNVLRSHVMEIANGADIADSLIQFARKRQSGVCILSGSGNVVNVTLRQPMVSGAVVALHGRYEILSLTGSFLPGLSSPDTIGLTIYLAGGQGQVVGGGVVGPVVAAGPVMIMAATFSNATYERLPLEEEDEEGEGSSPGGKKPARVSIRDGGTLLIPMYNNNVSPPNLASTLTNGQPHLNSEVGYSTWPHGHEYLRKRKVVLHFYTA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0650 303 CDD DUF296 101 184 IPR005175 -
Lal12g0650 303 MobiDBLite consensus disorder prediction 222 242 - -
Lal12g0650 303 Gene3D - 100 228 - -
Lal12g0650 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 226 - -
Lal12g0650 303 ProSiteProfiles PPC domain profile profile. 97 234 IPR005175 -
Lal12g0650 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 235 IPR014476 GO:0003680
Lal12g0650 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 214 IPR005175 -
Lal12g0650 303 MobiDBLite consensus disorder prediction 1 93 - -
Lal12g0650 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 9 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0650 Lal-Chr12 4743265 4744937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0650 1 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 51.186 3.87e-76 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0650 - - gmx:100795097 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0650 12 4743265 4744937 Lal12g0650 12 4743265 4744937 ECH
Lal12g0650 12 4743265 4744937 Lal24g0563 24 3988455 3989306 LSH