Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0647 ATGTGCACAACCCAATACGAATTGTGTGAAGAAATTGGTCGTGGTCGTTTTGGAACCGTTTTCCGTTGCTTCGATATAACTACCAACGAAATCTACGCTTGCAAAATCATCAACAAAACCGTTTTAACTGATTCAACCGATCGCCAATGTCTTCAAAACGAACCCAAATACATGACCCTTCTCTCTCCTCACCCTAACATCCTTCAAATCTACCACTTCACTGAAAACGACGACGTCTTAACCATCGTCATTCAACTCTGTCAAACCCTAACCCTATTCGACAAAATCGTCAAAACCACTTTTTCTGAGCCACAATCAGCTTCTATTATGGTTCAGCTTATTTCAGCTCTTAATCACTGTCACAATCTCGGTGTGGCTCATCGTGATATCAAACCAGACAACATTTTTTTCGATTCGATGGGTATTCTTAAATTGGGTGATTTTGGTTCTGCAGAGTGGTTTAGTGAGGAGAAAAAGATGAGTGGGATTGTTGGAACACCGTATTATGTGGCGCCAGAAATATTGATGGGGAAGGAGTATGATGAAAAGGTTGATATTTGGAGTTGTGGTGTGATTTTGTATTTAATGTTGGTTGGGATTCCACCTTTTTATGGTGATGATGCTGTTCAGATTTTTGAGGCTGTTGTTAAGGGTAATCTTAGGTTTCCTACAAGGTTGTTTAGGTCTGTGTCTTCTTCTGCTAAGGATTTATTAAGGAAGATGCTTTGTAAGGATCCTTCTAGAAGATTCTCTGCTCAACAAGTCTTGAGTATTACATCCTTGGATCTTGAGCGGAGGAAATTGAAAAATAAAGAGTTGCAATGGAGAAAGAATTATAACCCTACAATGAAAACAAGGAGATCATGGCTCTCCGTCCCGAAATGCAAATTTGTACCAGTTAAAAAAACAATGATCTACATGGTTCATGATGGTGTATCCCTTTGGTGTACAATTCCGAAATATCATAGGAGAGACCAATGGAACTCAACATTCCTTTTCTTGAAACAATTACAACTTCAAGAACAAGCTGACCTGTTGTGGCAGCAACCCTTTTCACCAAAATTACTTTCATGCTTTCGTACCAAGGAAGGACTGCAAGAGGAAAATTATATCATACCAGTAAATGCATCAAATACAAACATTGGAAGAATAAAAACATGGGACACCAGTGATGCTGAGCAATTTTGTGTACGCATTGCATCAGCAATTTTGTGTACGCATTGCATCAGCAAACATTAA 1239 0.3898 MCTTQYELCEEIGRGRFGTVFRCFDITTNEIYACKIINKTVLTDSTDRQCLQNEPKYMTLLSPHPNILQIYHFTENDDVLTIVIQLCQTLTLFDKIVKTTFSEPQSASIMVQLISALNHCHNLGVAHRDIKPDNIFFDSMGILKLGDFGSAEWFSEEKKMSGIVGTPYYVAPEILMGKEYDEKVDIWSCGVILYLMLVGIPPFYGDDAVQIFEAVVKGNLRFPTRLFRSVSSSAKDLLRKMLCKDPSRRFSAQQVLSITSLDLERRKLKNKELQWRKNYNPTMKTRRSWLSVPKCKFVPVKKTMIYMVHDGVSLWCTIPKYHRRDQWNSTFLFLKQLQLQEQADLLWQQPFSPKLLSCFRTKEGLQEENYIIPVNASNTNIGRIKTWDTSDAEQFCVRIASAILCTHCISKH 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0647 412 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Lal12g0647 412 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Lal12g0647 412 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Lal12g0647 412 Pfam Protein kinase domain 6 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0647 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lal12g0647 412 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 4 259 - -
Lal12g0647 412 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 259 - -
Lal12g0647 412 CDD STKc_CAMK 5 257 - -
Lal12g0647 412 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0647 412 Gene3D Transferase(Phosphotransferase) domain 1 90 295 - -
Lal12g0647 412 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0647 Lal-Chr12 4722026 4725019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0647 6 256 EF-hand Containing Proteins AT1G50700 40.000 4.00e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal12g0647 Pkinase 3.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0647 - K08794 gmx:548089 382.489