Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0646 ATGGATCAAACACTTTTAGATGACATAATCAATCGATTGCTTGAAGTTCGTGGGCGTCCAGGGAAGCAAGTTCAGCTTTCAGAATCTGAGATCCGACAATTATGTGCAGCTTCTAGAGAGATTTTTTTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGTGGCGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCTCCTGAGGCAAACTACTTGTTTTTGGGGGATTATGTGGATAGAGGGAAGCAGAGTTTAGAAACAATATGCCTTCTCCTTGCTTACAAAGTAAAATATCCAGAGAACTTTTTCCTTTTGAGGGGAAACCACGAATGTGCTTCTATAAACCGTATCTACGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGGTTGTGGAAGACATTTACAGACTGTTTCAATTGCCTGCCTGTGGCAGCTCTCATTGATGAGAAGATCTTGTGTATGCATGGGGGGCTTTCTCCTGACTTAGCTAATTTGGACCAGATTAGAAGTCTTCAGCGGCCCACTGATGTGCCCGATAGTGGTTTGCTTTGTGACCTCCTTTGGTCGGATCCGAGCAAAGAGGTCCAAGGTTGGGGAGTGAATGACCGGGGAGTTTCATATACATTTGGTTCTGATAAGGTAGCTGAGTTTCTTCAGAAACAAGATTTAGATCTTGTTTGCCGTGCTCATCAGGTGGTTGAGGATGGATATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCTGCACCTAATTACTGTGGGGAGTTTGACAATGCTGGCGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCTGCTGATAAAAGGGCAAAGCTCAATTTCGGAAGCACAACCACTACTAGGCCTGGAAACTCTCCAGCAGGTTTAAAGTCCTTCCTTGGTACGAAAGCATGA 981 0.4241 MDQTLLDDIINRLLEVRGRPGKQVQLSESEIRQLCAASREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLANLDQIRSLQRPTDVPDSGLLCDLLWSDPSKEVQGWGVNDRGVSYTFGSDKVAEFLQKQDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKRAKLNFGSTTTTRPGNSPAGLKSFLGTKA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0646 326 CDD MPP_PP1_PPKL 6 294 - -
Lal12g0646 326 SUPERFAMILY Metallo-dependent phosphatases 17 299 IPR029052 -
Lal12g0646 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Lal12g0646 326 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 320 - -
Lal12g0646 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
Lal12g0646 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Lal12g0646 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Lal12g0646 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Lal12g0646 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Lal12g0646 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Lal12g0646 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Lal12g0646 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Lal12g0646 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Lal12g0646 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Lal12g0646 326 Gene3D - 1 305 IPR029052 -
Lal12g0646 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0646 Lal-Chr12 4722002 4728726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0646 33 242 Calmodulin-binding Proteins AT5G63870 30.677 5.97e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0646 K06269 - gmx:100799218 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0646 12 4722002 4728726 Lal13g0729 13 4772823 4777704 ECH
Lal12g0646 12 4722002 4728726 Lal12g0646 12 4722002 4728726 ECH
Lal12g0646 12 4722002 4728726 Lal13g0729 13 4772823 4777704 LSH
Lal12g0646 12 4722002 4728726 Lal24g0559 24 3962892 3968202 LSH