Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0639 ATGATATCCGTTTTTCACCTGTCTCAGAAATACACTCTCCAGCATTCATTTTCTTACCCTCATGAAAGTGGTGATATTTCATGGGATCAATACCCGTTTCAGGATTTTATCGAGTTTCCTGATAGTGTTCCGGTCCAGAACAATCAGGCAGAAAATAGTACTTCTTACATATCTGGTGACAATGCCCAAACTACCGATCTCGGGGAATGGGCTGATGTTGATCAGTTACTGTCAGTCGATGATTCTCTTTTCCCAATTTGGGGTCAGTTTCTTGGTGATAATAATGTTGCAGAACCGAAGCCAGAGGTGCAGATATGTATCCCTTCTATATTGATGCAGGAGGCCCAGGTTTCACAGCAACAACATGCACAATCTAAAGAAGTTAATGGTCTTCCTAACTCAGTGTCAACTGCACCGCAAACGAAGTCTAGAATGCGTTGGACTCCTGAACTTCACGAGGCCTTTGTGGAAGCAATCAATCAGCTTGGTGGTAGTGAAAAGGCTACTCCAAAGGGTGTCTTGAAGCTGATGAAAGTTGAAGGCCTTACCATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCGGAGCCGTCAGAAGGAATTTCCGAGAAAAAGTTGACCGAAGTCGAAGAAATGAACTCTCTCGACTTAAAAACGAACAAAGGAATCACCGAAACACTGCGATTGCAGATGGAACTCCAGAAGCGACTTCATGAACAACTTGAGATTCAAAGAGAGTTACAAATTCAAATTGAAAGCCAAGGGAAGTGTCTTGAGATGATGTTTGAGAAACATATAGAGATGGACAAACCTTCTTCTCCTATCGACAATTTAGAAACAAAAAATGAGAAAGTTCGAATCAACAGTAACACTAGTAGCACTCCAGAAACACGAAGCAAAAGAGAGAGGCCGGTAAACATGAGCTGGGAGATGACCAGTTTGCTGCACCACTCTCAAAACGGGTGA 984 0.4258 MISVFHLSQKYTLQHSFSYPHESGDISWDQYPFQDFIEFPDSVPVQNNQAENSTSYISGDNAQTTDLGEWADVDQLLSVDDSLFPIWGQFLGDNNVAEPKPEVQICIPSILMQEAQVSQQQHAQSKEVNGLPNSVSTAPQTKSRMRWTPELHEAFVEAINQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGISEKKLTEVEEMNSLDLKTNKGITETLRLQMELQKRLHEQLEIQRELQIQIESQGKCLEMMFEKHIEMDKPSSPIDNLETKNEKVRINSNTSSTPETRSKRERPVNMSWEMTSLLHHSQNG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0639 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 199 IPR017930 -
Lal12g0639 327 SUPERFAMILY Homeodomain-like 140 196 IPR009057 -
Lal12g0639 327 Gene3D - 141 200 - -
Lal12g0639 327 MobiDBLite consensus disorder prediction 288 327 - -
Lal12g0639 327 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 17 285 - -
Lal12g0639 327 Pfam Myb-like DNA-binding domain 144 195 IPR001005 -
Lal12g0639 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 142 196 IPR006447 GO:0003677
Lal12g0639 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 17 285 IPR044848 GO:0003700
Lal12g0639 327 Pfam MYB-CC type transfactor, LHEQLE motif 229 271 IPR025756 -
Lal12g0639 327 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0639 Lal-Chr12 4666526 4670125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0639 20 274 G2-like Transcription Factor Family AT3G04450 50.769 1.09e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal12g0639 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0639 - - mtr:MTR_1g080330 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0639 12 4666526 4670125 Lal13g0719 13 4707368 4711232 ECH
Lal12g0639 12 4666526 4670125 Lal12g0639 12 4666526 4670125 ECH
Lal12g0639 12 4666526 4670125 Lal13g1051 13 7780574 7786596 LSH
Lal12g0639 12 4666526 4670125 Lal24g0555 24 3914745 3924588 LSH
Lal11g1080 11 14483495 14491161 Lal12g0639 12 4666526 4670125 PCT
Lal18g0235 18 1957189 1961086 Lal12g0639 12 4666526 4670125 PCT
Lal12g0639 12 4666526 4670125 Lal11g1080 11 14483495 14491161 PCT