Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0637 ATGGAGAGAAAAACCGAGGATGAAGTGGTAGATATTGGGAGTGCTTCTAGTTGTTCTTTTAGTGATGATTCAGAGGATGAAGGATCTTTATCTCCTGAAATAGATGACAAAGTGGATGTTGAGGAACCTTTGACTGAGAAAGAAATAGAGGACCTTATCTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTACTAAAATAGAGAGTGAAGTTAGACAAGAACTGAAGCAAACTCTTCAGGGGGATGATTTGGAAACTGCTGTTGGCGATGAGATGATTACTTTAAAAGAAGAGTGGGAAGATGTTCTAGATAACCTTGAAACTGAAAGTGCTCACTTACTGGAACAACTTGATGGGGCTGGAGTTGATCTCTCAAGCCTTTATAAGTGGATTGAAAAAGAAGCGCCCAATGGTTGCTGCACTGAAGCATGGAAAAAAAGGAATCATTGGGTAGGGTCTCAGGCAACTGCTGAAATTGCCGAGTCAGTTGCTGTTGCTGAGAAATATCTACAAGTAAACAGGCCTGTTAGGAGGAAGCATGGAAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTCTGATGAAACCCAGGAGCCCATAAAGAAAGAAACGGAGGGTGATTGGGATCTATTCAATAAAGTAGTTTCTGATGGGAGTGGTGCTGATGCTTCATTTGGCAGTAACCATTGGGCTTCTGTTTATTTAGCCAGCACTCCACAACAAGCTGCAATCATGGGCCTCAAATTTCCTGGTGTTAATGAGGTTGAGGAGATTGATGATATAGATGCCAGTTCTTCAGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAACAAAGGAGACAGTTTAAAAAGGATATGTCAAAAAGGTATTTGTCAAACCACCACCCATTTGTCTTAGCTGGACCTACACTTGAGGTGATTTTTCTAGATCTACCACTTGATCCAACTTCTTTTTTGGCTGAGGTCAAAGAAGAGGATGATGCAATTGTTGATAAGAAGCTTCAAATCCGTTTGAAACGTAGGAGGCATCGAAAGAAAAGTAAACAGCATGAACTGTGCCCACCTGATCTAGTCATGGAAGACCACATATCATCTGTCGATCATTTTAGTGATGAGAAGAAAATGGTGGCTGACAATGAGAAGGTTGCTTTTTTGAATACAAAGAATGATACAATTGAAGGTTTTGATGCCAACTCTCATCTTGACCAAGAAAAGCCTTTGAGTACCGCCGATTTGTCAGATCCCCTTAACTCATCATTGGCTGATGTTGAAGAACAGAGGGGAACCAAGCGTCCAAATGATAGTGAGATTGATACTGATAATAAAAAGTGTCGGACTGTTACTATAGACAGTGATGATGAAGCAGATGTCATTGAGGATAAGTTAGATTGCAATGCGAATACCATAAAGGATCAATCTGAGGTTAAAGAAGGTTTATGCAACAGAGGTGCTGATTCTCCTTCTGATAGTTTGGACGAGAAATTCTTCTGTACAATTTGTGATAATGTAGCCCTTGAAGTGTACTCCCACCCTCTTTTGAAAGTGATTATTTGTGGGGATTGCAGTTTCTTAATGAAGGAAAAGATACATGCAAAGGACCTGGCCGGCGACTGCTCTGAGCGTTACTGTGCATGGTGCGGAGGAAGCAGTGAATTAGTTATTTGTAAATTATGCAAGATATTATTTTGCACCAGCTGTATAAAGAAGAATCTTGGTGTAGATTTCCTTGATGAAGCTCAGGCCACTGGCTGGGATTGTTGTTGTTGCCGTCCAAATCTTTTGCAAAGATTGTCATTGCAACTACAGAGAGCCACAGGATCTGCTGATGTACTAGTTTCCAGCTCTGGTAGTGATTCCGATAATTCAGATGCTGGAATTAATGCTACAATCAGCTCTAAGCGAAGGCGTAAAAAGAAGATTCGGAGAATACTTGATGATACTGAATTAGGGGAAGAGACAAAAAGGAAAATTGCAATTGAAAAGGAGCGACAGGAACGCCTAAAGTCTTTGCGAGTGCAGTTTTCTGCCTCATCAAATGAGACAAGCTCTGCCGGTTGTAATGGGAATTTATCTGAAGGTGCAAGCATTGAAGTTCTTGGTGATGTGATAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCCCCTAGCATCTCAGCTAAACTGAAGGCCCATCAGGTAACTGGAATAAGATTTATGTGGGAAAATATTATACAGTCCATCAGAAAAGTGAAGTCTGGAGATAAAGGTCTTGGCTGTATTCTAGCTCATACCATGGGCCTCGGTAAAACTTTTCAGGTGATAGCTTTCTTGTACACTGCAATGAGAAGTGTTGATTTGGGGTTAAGAACTGCACTTATTGTCACACCCGTCAACGTGCTGCATAATTGGCGGCATGAATTCAACAAGTGGAGACCTTCAGAATTAAAGTCACTCAAGGTTTTCATGCTGGAAGATGTACCAAGAGATAGGAGGGCAGAATTGCTTGCAAAGTGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGCTATTCTGCTTTCCGGAATTTGTCTTTTGGAAAGCATGTGAAAGATCGGCACGTGGCCCGAGATATTTGCCATGCTTTGCAGGATGGACCAGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACTCAAGCCTTGAAACAAGTAAAATCTCAGAGGAGAATTGCGCTGACTGGATCACCCCTTCAAAACAATCTCATGGAATACTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGGCAAGACTTTCTTTACTCTCACTATTCTGTTTCAGACCATGATTTGTTATATGTTTTTCTGAAGACATTTTTCTGTCTATGCAGCTTCCAAAACCCTATAGAGAATGGTCAACACACTAATTCAACTCTAATTGATGTGAAAATTATGAACCAAAGATCTCATATCCTCTATGAACAGTTGAAAGGCTTTGTCCAAAGAATGGACATGAATGTGGTGAAGAAGGATTTACCACCTAAAACTGTGTTTGTGATAACTGTCAAGCTCTCTCCCTTACAGAGAACATTGTACAAAAAATTCCTTGATGTGCATGGGTTCACCAAGAACAGGGAGCCTCATGAAAAGCTAAGAAAGAGAAGTTTTTTTGCGGGGTACCAGGCGTTAGCTCGGATATGGAATCACCCTGGGATCTTGCAATTGACTAAAGAGGACAAGGAATATGTAAAACATGAAGATCCGGTTGAGAATTTTCTTGTGGATGATAGCTCCAGTGATGATAATTCTGATTGTAATCTGCTTGCTGGAGAGAAGATTAAGCATGCAAATGAGTCGATACAAAAGAAAGATAATACTGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCACGGAAAGATCTATAAAGAGATTGATCAAAGTGGCAAAATGGTTTTGTTGATTGAGATACTAACCATGAGTTCTGATGTGGGTGATAAGGTGTTAGTTTTCAGTCAGAGCATACCAACCCTAGACCTAATAGAACTTTATCTCTCAGGGATGCCTAGACGTGGCAAACGAGGGAAGTTTTGGAAGAAGGGTAAAGACTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAACTTGTTGAGAGATTTAACGAGCCTTCAAATAGGAGAGTAAAATGCACTTTGATTTCAACCCGAGCAGGTTCTTTGGGTATTAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGTTCTTGGAATCCCACATATGATCTCCAGGCTATCTATCGAGCATGGAGCTGGAAAGGAATAGTAGTCTTTAGAGACTCCGTGTCTTTAGACTTTGTTTGGGAGAGGGTTACACTTTTGACATCCCTTAGGTATGGGCAGAGAAAACCTGTGTTTGCCTACCGATTGCTGGCTCATGGAACCATGGAAGAAAAAATATATAAGCGTCAGGTAACAAAGGAGGGGCTTGCCGCCAGAGTGGTTGATAGGCAGCAAGTGCATAGGACTATATCTAAAGAGGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAGAATCCTGAGACTTTGGTTGAGCTGAGTGAAGAAAATGGGCATACACTGAAACATACAGTATCACATTCAAATGGAAGCAGTAATTCCGATAAGCTAATGGAAAGCTTGCTTAGCAAGCATCATCCACGGTGGATTGCCAATTATCACGAACATGAAACCCTGTTACAAGAAAATGAAGACGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGTAAATCACTGCAATCAGAATGGGAAGAAGTGCAGAGAGTGCCACTTGCTGAATCTGTCCCTGTTCAAAAGCCAGAAATACCAAAAACAGAACCCTTTGTTGTATCAGATCCCCTAACCATTGTAAAAAATAAGCTAAGGAATCGTTTCTTTACCCGAAAGTGCACCAAACTTGTGCACATCCTGACGCTTCGAAGTCAGAGCATAAAACGTGGTTGCTGTACAATTTGCGGGGAATGCGCCCAGGAGATAAGGTGGGAAGAGGTGTTGAATAAAGATGGAAGTGTGGCAAGGTGA 4707 0.4128 MERKTEDEVVDIGSASSCSFSDDSEDEGSLSPEIDDKVDVEEPLTEKEIEDLISELLEVESKAAEAQEALEEESLTKIESEVRQELKQTLQGDDLETAVGDEMITLKEEWEDVLDNLETESAHLLEQLDGAGVDLSSLYKWIEKEAPNGCCTEAWKKRNHWVGSQATAEIAESVAVAEKYLQVNRPVRRKHGKLLEEGASGFLQKKLSDETQEPIKKETEGDWDLFNKVVSDGSGADASFGSNHWASVYLASTPQQAAIMGLKFPGVNEVEEIDDIDASSSDPFIAAAIANERELDLSDEQRRQFKKDMSKRYLSNHHPFVLAGPTLEVIFLDLPLDPTSFLAEVKEEDDAIVDKKLQIRLKRRRHRKKSKQHELCPPDLVMEDHISSVDHFSDEKKMVADNEKVAFLNTKNDTIEGFDANSHLDQEKPLSTADLSDPLNSSLADVEEQRGTKRPNDSEIDTDNKKCRTVTIDSDDEADVIEDKLDCNANTIKDQSEVKEGLCNRGADSPSDSLDEKFFCTICDNVALEVYSHPLLKVIICGDCSFLMKEKIHAKDLAGDCSERYCAWCGGSSELVICKLCKILFCTSCIKKNLGVDFLDEAQATGWDCCCCRPNLLQRLSLQLQRATGSADVLVSSSGSDSDNSDAGINATISSKRRRKKKIRRILDDTELGEETKRKIAIEKERQERLKSLRVQFSASSNETSSAGCNGNLSEGASIEVLGDVIAGYIVNVVREKGEEAVRIPPSISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRHEFNKWRPSELKSLKVFMLEDVPRDRRAELLAKWRAKGGVFLIGYSAFRNLSFGKHVKDRHVARDICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKSQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRQDFLYSHYSVSDHDLLYVFLKTFFCLCSFQNPIENGQHTNSTLIDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRTLYKKFLDVHGFTKNREPHEKLRKRSFFAGYQALARIWNHPGILQLTKEDKEYVKHEDPVENFLVDDSSSDDNSDCNLLAGEKIKHANESIQKKDNTGFFLKGWWNDLLHGKIYKEIDQSGKMVLLIEILTMSSDVGDKVLVFSQSIPTLDLIELYLSGMPRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPSNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWSWKGIVVFRDSVSLDFVWERVTLLTSLRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLVELSEENGHTLKHTVSHSNGSSNSDKLMESLLSKHHPRWIANYHEHETLLQENEDEKLSKEEQDMAWEVYRKSLQSEWEEVQRVPLAESVPVQKPEIPKTEPFVVSDPLTIVKNKLRNRFFTRKCTKLVHILTLRSQSIKRGCCTICGECAQEIRWEEVLNKDGSVAR 1568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0637 1568 CDD ADDz_ATRX 516 614 - -
Lal12g0637 1568 MobiDBLite consensus disorder prediction 430 446 - -
Lal12g0637 1568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 1034 IPR027417 -
Lal12g0637 1568 PANTHER RAD54-LIKE 35 1306 - -
Lal12g0637 1568 PANTHER RAD54-LIKE 1334 1564 - -
Lal12g0637 1568 ProSiteProfiles ADD domain profile. 508 640 IPR025766 -
Lal12g0637 1568 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1186 1384 IPR001650 -
Lal12g0637 1568 MobiDBLite consensus disorder prediction 1 43 - -
Lal12g0637 1568 Pfam SNF2-related domain 775 1104 IPR000330 GO:0005524|GO:0140658
Lal12g0637 1568 SMART ultradead3 748 968 IPR014001 -
Lal12g0637 1568 MobiDBLite consensus disorder prediction 447 462 - -
Lal12g0637 1568 Coils Coil 107 127 - -
Lal12g0637 1568 PANTHER RAD54-LIKE 35 1306 IPR044574 GO:0016887
Lal12g0637 1568 PANTHER RAD54-LIKE 1334 1564 IPR044574 GO:0016887
Lal12g0637 1568 Gene3D - 1045 1465 IPR027417 -
Lal12g0637 1568 Pfam Helicase conserved C-terminal domain 1184 1306 IPR001650 -
Lal12g0637 1568 MobiDBLite consensus disorder prediction 430 462 - -
Lal12g0637 1568 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 774 957 IPR014001 -
Lal12g0637 1568 CDD SF2_C_SNF 1177 1347 - -
Lal12g0637 1568 Gene3D - 724 982 IPR038718 -
Lal12g0637 1568 Coils Coil 1443 1463 - -
Lal12g0637 1568 SMART helicmild6 1212 1309 IPR001650 -
Lal12g0637 1568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1040 1400 IPR027417 -
Lal12g0637 1568 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0637 Lal-Chr12 4629911 4660147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0637 762 1366 RAD5 or RAD16-like Gene Family AT1G02670 24.763 7.25e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal12g0637 SNF2_N 2.1e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0637 K10779 - gmx:100818409 2211.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0637 12 4629911 4660147 Lal12g0637 12 4629911 4660147 ECH