Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0625 ATGGCAAGTTGTGTAGTGAAGGGAGAGAAATACAAGATGATAAACTTTGAAGAAACGGAGTTACGATTAGGGTTACCTGGTGAATCAACAACAGTAAAGAGCACTTGTAATATTAGTGGCAAGAGAGGTTTCTCAGATACCAATACTGCTATGGATTTGAAGCTTAATCTTTCTTCTTCCAATGTCTCTGTGGATAAGATCAAAGACAATATTACTACTACTGCTAAACCTTCTCATCCTAGTGACCCAGCAAAACCACCTTCTAAGGCACAAGTAGTAGGTTGGCCACCAGTTCGATCATATAGAAGGAACATAGTGAATAATGTTCAAAGGAGCAATAACAATGAAATCGAGAAGAAAGCTACCACCATTATCACTAAGACCGCGACTGCGACCGCCACCACTAATATTGGGGTCAATAATAGTATAGGTGCTTTTGTGAAGGTAAGCATGGATGGTGCACCTTATCTACGCAAGGTGGATTTGAAGTTGTACAATAGTTACCAAGAGCTATCAGATGCAGTGGCTAAAATGTTCAGCTCATTCACAATTGAAAAATGTGGGTCCCAAGGCATGAAGGACTTCATGAATGAGAATAAATTAATAGACATTTTAAATGATTCCGATTATGTGTCTACATATGAAGATAAGGATGGTGATTGGATGTTAGTGGGTGATGTACCATGGGAAATGTTCGTTCAATCATGCATGCGCCTGCGCATAATGAAAGGTTCTGAGGCAATTGGGCTAGCACCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 789 0.403 MASCVVKGEKYKMINFEETELRLGLPGESTTVKSTCNISGKRGFSDTNTAMDLKLNLSSSNVSVDKIKDNITTTAKPSHPSDPAKPPSKAQVVGWPPVRSYRRNIVNNVQRSNNNEIEKKATTIITKTATATATTNIGVNNSIGAFVKVSMDGAPYLRKVDLKLYNSYQELSDAVAKMFSSFTIEKCGSQGMKDFMNENKLIDILNDSDYVSTYEDKDGDWMLVGDVPWEMFVQSCMRLRIMKGSEAIGLAPRAVEKCKNRS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0625 262 PANTHER AUXIN-INDUCED PROTEIN AUX28 9 255 - -
Lal12g0625 262 SUPERFAMILY CAD & PB1 domains 139 243 - -
Lal12g0625 262 MobiDBLite consensus disorder prediction 73 93 - -
Lal12g0625 262 Pfam AUX/IAA family 18 253 IPR033389 -
Lal12g0625 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 255 IPR003311 GO:0005634|GO:0006355
Lal12g0625 262 Gene3D - 139 256 - -
Lal12g0625 262 ProSiteProfiles PB1 domain profile. 144 244 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0625 Lal-Chr12 4528620 4532036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0625 147 247 B3 DNA Binding Superfamily AT2G46530 33.663 6.46e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal12g0625 AUX_IAA 3.8e-81 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0625 12 4528620 4532036 Lal13g0706 13 4592041 4595435 ECH
Lal12g0181 12 1262558 1265160 Lal12g0625 12 4528620 4532036 ECH
Lal12g0625 12 4528620 4532036 Lal12g0625 12 4528620 4532036 ECH