Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0620 ATGTTTGATGGAGTACCAGACCAGCTCCACCAATTCATAACACCAATGACTTCACTTCCACTTCATTTACCTTTCCCTCTTCATGCTTCTTCTGCTACTGCACCAACCAATATTTTTCCTTCTTTTGATCCTTATAATACTTCTCCTCATCAAATGCCATTTCAACTCCAACCCAATCCCTTGCAACAATTACACCAACAACACAAACCTTCTACCCACAAAGAGCATGAAGGTGATCATGAGAAGGAACATAGTACTACTACCTTGCCAATGAACTTTGAAATTGATCAAAGTATTGATCCTTGGACTAATGATGAAGTGCTTGCACTTTTGAAGATCAGATCTAGCATGGAGAGTTGGTTCCCTGAGCTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGAAGTGCAGAAACGTGCAAGGAGAAGTTTGAAGAAGAAAGCAGATATTTTAACAACATTAACTACATCAAGAACAATAATAATAATTATAGGTTTCTTAGTGAGCTTGAAGAGCTTTATAATCAAGGTGATAATCATCAAGTTGATGAAACTGAAAAGCCAAGAACCATAGAAGAGGAACAACACAAGATAATGGACCTAGAAGAGGGTTCAACAAAACACAAAGAACAAGATGGTAATGAAGAAGAGGAAGAGAAGAGGCCTAAGAGGAAGAGGCCAAACAGGTTTGAGATGTTTAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGAACAACAAGAAGAGATGCACAACAAGTTGATAGAAGATATGATGAAGAGAGATGAAGAGAAGTTTGCAAGGGAAGAAGCTTGGAAGAAGCAAGAGATGGATAGGATGAACCAAGAGCTTGAGATTATGGCACAGGAACAAGCTATTGCTGGTGATAGACATGCCAATATAATTGAATTTTTGAACAAGTTCTCAGCAAGCACTTCTTCTCCTAGTTCATGTCAAATCAAGGTAACAAATGTTTCAAATCCAAATATTTGCACTGATCCTTCTTCACAACCATCACACAAAAACCCTAATCCTTCTAATATGGTTCTCAATCATCTAAATAATGTTACTTCAGAAGCTGAAAACCCTAGCTCTATTCCTTGCCAAGAAACATTACAAAATGCTTCTTCTACTACTTCACCTCCAATTCTTCAGAACCCTAGTTCTTCTTCTCTAAATAGACAGAATAATACAAATTCAGTTTCAAATAAAGCCTCCTCAAATGTTAATGTTGAGAAAGATGGTGTTGGGAGAAGATGGCCAAAAGATGAAGTGTTGGCACTGATAAATCTCAGGTGCAGTAGTGTAAACAATAACAACAACAACAATAATGAAGAGAAGGAAGGAAACAAGGCACCACTGTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATATGAGAGAAGTGCAAAAAGATGCAAAGAAAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACAAAAGATAATAATAAGAAGAGATCACTTGACTCAAGAACTTGTCCTTACTTCCACCAATTGAGTAATCTGTATAATCAAGGTAAGTTTGTTCTACAATCTGAAAAGCTAGAAGCAAATAATCCTGTGGGAGTGAGTGTGACTACACCAGATCAAAATCAAAGCCAGTTAGCTGAGTCTTCTCAAGTGGGGTCTGGTGGGTTCAGTGTTGATCATCATGGAGGTGAGAAAACTTTGATGCAAGTACCTTCTTTGGATTTTGATAAGTTTTAA 1752 0.3796 MFDGVPDQLHQFITPMTSLPLHLPFPLHASSATAPTNIFPSFDPYNTSPHQMPFQLQPNPLQQLHQQHKPSTHKEHEGDHEKEHSTTTLPMNFEIDQSIDPWTNDEVLALLKIRSSMESWFPELTWEHVSRKLAELGYKRSAETCKEKFEEESRYFNNINYIKNNNNNYRFLSELEELYNQGDNHQVDETEKPRTIEEEQHKIMDLEEGSTKHKEQDGNEEEEEKRPKRKRPNRFEMFKGFCESIVHKMMEQQEEMHNKLIEDMMKRDEEKFAREEAWKKQEMDRMNQELEIMAQEQAIAGDRHANIIEFLNKFSASTSSPSSCQIKVTNVSNPNICTDPSSQPSHKNPNPSNMVLNHLNNVTSEAENPSSIPCQETLQNASSTTSPPILQNPSSSSLNRQNNTNSVSNKASSNVNVEKDGVGRRWPKDEVLALINLRCSSVNNNNNNNNEEKEGNKAPLWERISQGMLELGYERSAKRCKEKWENINKYFRKTKDNNKKRSLDSRTCPYFHQLSNLYNQGKFVLQSEKLEANNPVGVSVTTPDQNQSQLAESSQVGSGGFSVDHHGGEKTLMQVPSLDFDKF 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0620 583 CDD GT1 102 156 - -
Lal12g0620 583 CDD GT1 424 495 - -
Lal12g0620 583 MobiDBLite consensus disorder prediction 378 416 - -
Lal12g0620 583 MobiDBLite consensus disorder prediction 335 354 - -
Lal12g0620 583 PANTHER - 13 574 - -
Lal12g0620 583 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 574 - -
Lal12g0620 583 MobiDBLite consensus disorder prediction 61 88 - -
Lal12g0620 583 MobiDBLite consensus disorder prediction 68 87 - -
Lal12g0620 583 MobiDBLite consensus disorder prediction 535 560 - -
Lal12g0620 583 MobiDBLite consensus disorder prediction 182 232 - -
Lal12g0620 583 Pfam Myb/SANT-like DNA-binding domain 100 177 IPR044822 -
Lal12g0620 583 Pfam Myb/SANT-like DNA-binding domain 424 516 IPR044822 -
Lal12g0620 583 Coils Coil 196 216 - -
Lal12g0620 583 MobiDBLite consensus disorder prediction 535 570 - -
Lal12g0620 583 Gene3D - 426 493 - -
Lal12g0620 583 Gene3D - 102 158 - -
Lal12g0620 583 MobiDBLite consensus disorder prediction 378 422 - -
Lal12g0620 583 ProSiteProfiles Myb-like domain profile. 425 488 IPR001005 -
Lal12g0620 583 SMART sant 422 490 IPR001005 -
Lal12g0620 583 SMART sant 98 155 IPR001005 -
Lal12g0620 583 ProSiteProfiles Myb-like domain profile. 101 153 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0620 Lal-Chr12 4500314 4502870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0620 1 520 Trihelix Transcription Factor Family AT5G28300 39.404 3.10e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal12g0620 Myb_DNA-bind_4 5.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0620 - - ccaj:109795059 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0620 12 4500314 4502870 Lal12g0620 12 4500314 4502870 ECH
Lal12g0620 12 4500314 4502870 Lal13g0694 13 4510294 4512958 LSH
Lal12g0620 12 4500314 4502870 Lal24g0537 24 3787595 3790026 LSH