Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0617 ATGAGTGGTTCTTCACAGTTAGAACTATATGATCCTGATTTTGTTGAAGTTGATCCAACTGGAAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCGAAGATAGTTTATAGAGCATTTGATGAGTACCAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGCTTTATGATTTCCTGCAAAGTTCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCATAGGAACATTATGAAATTTTATACATCTTGGGTTGATACTGCTAATAGGAATATTAATTTTGTGACTGAAATGTTTACTTCTGGTACTCTTAGACAGTATAGGTTAAAGCACAGGAGAGTTCACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAAAGGACTTCTCTATCTTCATAGCCATGACCCACTCGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATCAATGGAAATCAAGGAGAAGTGAAGATTGGGGATCTCGGCCTGGCTGCAATCCTCCGGAAATCCCATGCCGATCATTGTGTAGGAACACCTGAGTTCATGGCCCCAGAAGTATACCAAGAGGCGTATAATGAATTAGTTGACATATATTCTTTTGGTATGTGCATATTAGAGATGGTGACATTTGAATATCCTTACAGTGAGTGCACTCATCCAGCTCAAATCTACAAGAAAGTTATTTCTGGGGAAAAACCAGATGCTTTGTATAAAGTGAAGGATCCAGACGTGCGAGAATTTGTTGAGAAATGCTTGGCAACAGTTTCTCTAAGGCTCTCTGCAAAGGAGCTTCTAGATGATCCATTTCTTCGGGATGATGATTGCGAGTACGATTTGAGACCCGTAAACAATGATGGATTGGATGACTTTGTTCCTCTTATTGGACAGCCATTCATCAATCTTCATCAAAGCTATAGTAAATTTAGTAATGAATACTCAAATGGTTTTGGGTATGAAGGAGACTGGAGTTCTCATACAGCTGAGATTGAACATTGTGGAATTGAACCTTTGGAGCACAATGATGATGATGAACCCTCTGAAGACGTTGCCATAAGCATCAAGGGCGAGAGGAAAGATGATGATGGCATCTTTTTGAGACTAAGAATTACTGATAAAGAAGGTCATGTTCGAAACATTTATTTCCCATTTAACGTAGAGATGGACACAGCAATAAGCGTGGCAACTGAAATGGTTGCCGAACTTGACATTACTGATCAGGATGTTACCAGTATAGCAGTTATGATAGACGGTGAAATTGCTTCCTTGGTACCTGATTGGAGGCCAGGACCTGGAATTGAGGAAACCCCTTATAATCAAGGTTTATGTCTGAATTGTGTGTCTAATCATACTGATAGTGCCTCTGTGCTGGATTTTCTTTCAAATAATCCAGGTAGCGAGAACTTGCAACTTCTTGAGTGTAGGCACGAATGCGCTTCATTGCATGGGCAGCCCGAAGAGATCACGTTCCAATCCGAGGAGTATGACAATCAGGTTAGAGATGATGTACTTAACGCATCAAGCCAATCAAATTTATCACAGTATCAGGATTGCTGGAGTCGGCATGAAAGTTGTGAACTGAGTCAGGTAGAGTCTGATCAAAGCCATTATGATGAAGCATGTGAACAGTTTGACAAATCCGTATCAGCTGAAAACAAAGGACAAAATGCTTTGAAAAAAAAATCCAAGACCCGTGCAGTAAATTGCCTGCCAAAACCAGAAACCCGAGATTTCTCGGTTATCCACTCAATGTACCGTAGCTTGAGAAGGAGTATTAAAAAGATATCGAAAAGGAACTGA 1830 0.4005 MSGSSQLELYDPDFVEVDPTGRYGRYNEILGKGASKIVYRAFDEYQGIEVAWNQVKLYDFLQSSEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVHIRAVKHWCRQILKGLLYLHSHDPLVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYQEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGEKPDALYKVKDPDVREFVEKCLATVSLRLSAKELLDDPFLRDDDCEYDLRPVNNDGLDDFVPLIGQPFINLHQSYSKFSNEYSNGFGYEGDWSSHTAEIEHCGIEPLEHNDDDEPSEDVAISIKGERKDDDGIFLRLRITDKEGHVRNIYFPFNVEMDTAISVATEMVAELDITDQDVTSIAVMIDGEIASLVPDWRPGPGIEETPYNQGLCLNCVSNHTDSASVLDFLSNNPGSENLQLLECRHECASLHGQPEEITFQSEEYDNQVRDDVLNASSQSNLSQYQDCWSRHESCELSQVESDQSHYDEACEQFDKSVSAENKGQNALKKKSKTRAVNCLPKPETRDFSVIHSMYRSLRRSIKKISKRN 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0617 609 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0617 609 SUPERFAMILY Protein kinase-like (PK-like) 27 293 IPR011009 -
Lal12g0617 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 601 - -
Lal12g0617 609 CDD STKc_WNK 22 281 - -
Lal12g0617 609 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 428 IPR024678 GO:0004674|GO:0005524
Lal12g0617 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 6 601 - -
Lal12g0617 609 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
Lal12g0617 609 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Lal12g0617 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Lal12g0617 609 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0617 609 Gene3D - 373 436 - -
Lal12g0617 609 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0617 Lal-Chr12 4477871 4481295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0617 14 533 MAP Kinase Kinase Kinase AT3G22420 55.357 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lal12g0617 Pkinase 9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0617 K08867 - gmx:100272198 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0617 12 4477871 4481295 Lal12g0617 12 4477871 4481295 ECH
Lal12g0617 12 4477871 4481295 Lal13g0689 13 4463459 4467097 LSH
Lal5g0095 5 901125 904419 Lal12g0617 12 4477871 4481295 PCT
Lal12g0617 12 4477871 4481295 Lal5g0095 5 901125 904419 PCT