Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0616 ATGGCGGAAAAGGCCGTTACCATCCGAACCCGAAAGTTTATGACCAATAGGCTTCTATCAAGGAAGCAATTCATTATTGATGTTCTTCATCCAGGGAGGGCTAATGTGTCCAAGGCTGAACTAAAAGAGAAACTAGCTAGAATGTATGACGTGAAGGATCCAAACTCTGTGTTTGTGTTCAAGTTCCGAACTCACTTTGGTGGTGGTAAATCTACTGGCTTTGGTTTGATTTATGACTCTGTTGAGAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTATCAGGAATGGACTTGACACCAAGGTAGAGAAGTCCAGGAAACAAATGAAGGAGAGAAAGAACAGAGCTAAGAAGATACGGGGAGTAAAGAAGACAAAGGCATCTGATGCTGCCAAGGCTGGAAAGAAGAAATGA 414 0.43 MAEKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLARMYDVKDPNSVFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0616 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lal12g0616 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lal12g0616 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Lal12g0616 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lal12g0616 137 MobiDBLite consensus disorder prediction 102 137 - -
Lal12g0616 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Lal12g0616 137 Gene3D - 1 132 - -
Lal12g0616 137 Pfam Ribosomal protein S24e 26 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0616 Lal-Chr12 4475370 4477207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0616 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.879 1.73e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0616 K02974 - cit:102608879 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0616 12 4475370 4477207 Lal12g0616 12 4475370 4477207 ECH
Lal12g0616 12 4475370 4477207 Lal13g0687 13 4450126 4452013 LSH