Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0610 ATGGGGTGTGTGATTGGCCGAGAAGTGTCGAGAATAATCTTTGAGGCGAAGGAGGAGAAGAATTTGAGAGTTAAGTCAAACAGGAAGGTTGATGAAGGTTCCACCAGCGGTACTGATGGAAATGTGGTAAAGGTTATGAATGATGAGAAGGAGAAGGGAGAGAAGGGTGGTGAATCTGGTGATGATGCGACTCAGACTCAGCGACCGCAAGGGGAAAGAAGAAGAAAATTAAAGCCAAATCCTCGGCTAAGTAATCCCCCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCATCTTGGCTTACAGCAGTGTGTGGGGAAGCACTTAGTGGGTGGACTCCGCGGAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACCTATAGTAATGTGTACAAAGCTAAAGATATGTTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGGGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCAAGGATGTCCATGAGTTTGTATCTGGTGTTTGATTACATGGTACATGATTTAGCAGGACTTGCTGCAAGTCCTGAAATCAAGTTCTCGGAGCCTCAGTGGCGGTATTTGATGTCTCCAAATATGATGCATCTCCTACTGCAGGTCAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAAGAGACACGTACTTCACCGTGATATTAAAGGATCAAATCTTCTGATTAACGAGGAAGGAATACTTAAGATTGCTGACTTTGGACTTGCATCTTTATTTGATCCAGACCGTAAGCATTCTATGACTAACCGGGTAGTTACCCTTTGGTATCGGCCTCCTGAGTTGCTGCTCGGTGCCACAGAATATGGTGTCGGTGTGGACCTTTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTTGCTGGGAAACCAATTATGCCTGGCCGTACAGAGGTGGAACAATTACATAAGATATACAAACTCTGTGGTTCGCCGTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCCAACACTACTTTGTTTAAACCACGAGAACCATACAAGAGATGCATAACAGAGACATTTAAAAATTTTCCACCTTCTTCATTACCCCTTATTGATACTCTTCTTGCTATTGATCCAGCAGAACGGAGGAGTGCCTCAGATGCTTTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAACCAAGGAAATGGATGCTAAACGACGGGACGATGAAGCGAGGAGATTAAGAGCTTCCGGAAAAGCTCGTGGTGATGGTGCAAAGAAGCATCGGACCCGTGATCGTGCTGTAAAACATATTCCTGCTCCTGGAGCCAATGCTGAGATTCAATACAATATTGATCTAAGACGACGTCTAGTCTCTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCGCCTCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCACAACATATTGATCCAGATAATGTTCCACATGATGTCTCTTTGGGTTCAACCTCATATATCTATTCAAATGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATTCTGCTACCAATGGCATGCCTAAGAGGAAGAAAAAACAAACTGCAAGTGATGCATTGGACTTATCAAAACCACATAAAAATTCTCTCATGGATAAAGTTAAAGGAAAGAAAATCATAGCTTAG 1806 0.4297 MGCVIGREVSRIIFEAKEEKNLRVKSNRKVDEGSTSGTDGNVVKVMNDEKEKGEKGGESGDDATQTQRPQGERRRKLKPNPRLSNPPKHLQGEQVAAGWPSWLTAVCGEALSGWTPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSMSLYLVFDYMVHDLAGLAASPEIKFSEPQWRYLMSPNMMHLLLQVKCYMHQLLSGLEHCHKRHVLHRDIKGSNLLINEEGILKIADFGLASLFDPDRKHSMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELFAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNTTLFKPREPYKRCITETFKNFPPSSLPLIDTLLAIDPAERRSASDALRSEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDEARRLRASGKARGDGAKKHRTRDRAVKHIPAPGANAEIQYNIDLRRRLVSHANAKSKSEKFPPPHEDGQLGFPLGSSQHIDPDNVPHDVSLGSTSYIYSNEPFQAWSGPIGNSATNGMPKRKKKQTASDALDLSKPHKNSLMDKVKGKKIIA 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0610 601 ProSiteProfiles Protein kinase domain profile. 122 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0610 601 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Lal12g0610 601 PANTHER OS01G0367700 PROTEIN 48 576 - -
Lal12g0610 601 MobiDBLite consensus disorder prediction 44 79 - -
Lal12g0610 601 MobiDBLite consensus disorder prediction 18 91 - -
Lal12g0610 601 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Lal12g0610 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Lal12g0610 601 SMART serkin_6 122 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0610 601 MobiDBLite consensus disorder prediction 556 601 - -
Lal12g0610 601 SUPERFAMILY Protein kinase-like (PK-like) 116 428 IPR011009 -
Lal12g0610 601 MobiDBLite consensus disorder prediction 556 570 - -
Lal12g0610 601 MobiDBLite consensus disorder prediction 571 601 - -
Lal12g0610 601 CDD STKc_CDK9_like 122 421 - -
Lal12g0610 601 MobiDBLite consensus disorder prediction 430 472 - -
Lal12g0610 601 MobiDBLite consensus disorder prediction 439 469 - -
Lal12g0610 601 Pfam Protein kinase domain 122 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0610 601 MobiDBLite consensus disorder prediction 18 32 - -
Lal12g0610 601 Gene3D Transferase(Phosphotransferase) domain 1 206 460 - -
Lal12g0610 601 PANTHER CELL DIVISION PROTEIN KINASE 48 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0610 Lal-Chr12 4399296 4404294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0610 114 459 Core Cell Cycle Gene Families AT5G10270 48.895 1.75e-113 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal12g0610 Pkinase 3.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0610 K08819 - gmx:100817289 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0610 12 4399296 4404294 Lal13g0679 13 4391949 4397571 ECH
Lal12g0610 12 4399296 4404294 Lal12g0610 12 4399296 4404294 ECH
Lal12g0610 12 4399296 4404294 Lal13g0679 13 4391949 4397571 LSH