Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0602 ATGTGTTGGTCTGAGGGAGAAAGAGATATGGCACTAGAAGCAGTAGTATATCCACAAATACTACAAGACCCTTTTGGTTATGGAGTCAAAGATTTATACCACAATAACTTGTTTTCTGGTGCTACTAACTGGGGCTATGAAAACCTTCTCAGCCTTGAAAATGAGCAAAACCAAAAAGGAGAAGGGTCTATAAGTTTTGTAGAGAACAAAACAGCACTAAGTTATGATCACTTAAATGAACTTCATAATATTTCTAATGAACTTTCTTCAGAGGGTACTACTCATTTCAGCAACACACAGAACCTTGATAACTCAACATCAACCTCTTATCGTCCCAAGAGGCGCAGAGCCAGAAGCAGAAAGAACAAGGAAGAGATTGAGAATCAGAGAATGACTCACATTGCTGTTGAGAGAAACAGAAGGAAGCAGATGAATGAGTATCTCTCTGTTATTAAGACACTAATGCCAGAGTCTTATGTTCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAGGAACTTGAGCACAAGCTGCAATTTATTGATTCTCAAAAAGAAACAGAAGGGAAATCTGATGTAGTTGATGCAAATATTCCATTTTCTGAGTTCTTCACTTTTCCTCAGTATTCAACAAGTGCTAGTGGCTGTGATAATTCTGTGGACTCAAATGAACAAGTATGTAAAGTTCAGTTTGGAATTGCTGATATAGAAGTAACAATGGTGGAAAGCCATGCAAATCTCAAGATAAGATCCAAAAAGAGGCCAAAACAGCTCTTGAAGATAGTATCAGATTTACACACCATGCGCCTCACAATCTTGCACTTAAATGTTACAACCACTGGTGAAATTATCCTATACTCTCTTAGTGTTAAGGTTGAAGATGATTGCAAGTTGGGATCAGTAGATGATATAGCTGCAGCTGTAAACCAAATATTGGATAGGATTCAACAAGAGGCAATGTTGAATTAA 984 0.374 MCWSEGERDMALEAVVYPQILQDPFGYGVKDLYHNNLFSGATNWGYENLLSLENEQNQKGEGSISFVENKTALSYDHLNELHNISNELSSEGTTHFSNTQNLDNSTSTSYRPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVIKTLMPESYVQRGDQASIIGGAINFVKELEHKLQFIDSQKETEGKSDVVDANIPFSEFFTFPQYSTSASGCDNSVDSNEQVCKVQFGIADIEVTMVESHANLKIRSKKRPKQLLKIVSDLHTMRLTILHLNVTTTGEIILYSLSVKVEDDCKLGSVDDIAAAVNQILDRIQQEAMLN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0602 327 SMART finulus 134 185 IPR011598 GO:0046983
Lal12g0602 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 191 IPR036638 GO:0046983
Lal12g0602 327 PANTHER MAX DIMERIZATION, MAD 10 327 - -
Lal12g0602 327 Pfam Helix-loop-helix DNA-binding domain 129 180 IPR011598 GO:0046983
Lal12g0602 327 Gene3D - 118 199 IPR036638 GO:0046983
Lal12g0602 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 179 IPR011598 GO:0046983
Lal12g0602 327 MobiDBLite consensus disorder prediction 90 108 - -
Lal12g0602 327 MobiDBLite consensus disorder prediction 90 124 - -
Lal12g0602 327 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0602 Lal-Chr12 4343609 4345969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0602 10 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.513 4.05e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal12g0602 HLH 9.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0602 - - gmx:100782243 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0602 12 4343609 4345969 Lal12g0602 12 4343609 4345969 ECH
Lal12g0602 12 4343609 4345969 Lal13g0663 13 4309879 4312925 LSH
Lal5g0132 5 1185272 1188916 Lal12g0602 12 4343609 4345969 PCT
Lal3g1478 3 20667448 20669552 Lal12g0602 12 4343609 4345969 PCT
Lal12g0602 12 4343609 4345969 Lal5g0132 5 1185272 1188916 PCT
Lal12g0602 12 4343609 4345969 Lal3g1478 3 20667448 20669552 PCT