Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal12g0602 | ATGTGTTGGTCTGAGGGAGAAAGAGATATGGCACTAGAAGCAGTAGTATATCCACAAATACTACAAGACCCTTTTGGTTATGGAGTCAAAGATTTATACCACAATAACTTGTTTTCTGGTGCTACTAACTGGGGCTATGAAAACCTTCTCAGCCTTGAAAATGAGCAAAACCAAAAAGGAGAAGGGTCTATAAGTTTTGTAGAGAACAAAACAGCACTAAGTTATGATCACTTAAATGAACTTCATAATATTTCTAATGAACTTTCTTCAGAGGGTACTACTCATTTCAGCAACACACAGAACCTTGATAACTCAACATCAACCTCTTATCGTCCCAAGAGGCGCAGAGCCAGAAGCAGAAAGAACAAGGAAGAGATTGAGAATCAGAGAATGACTCACATTGCTGTTGAGAGAAACAGAAGGAAGCAGATGAATGAGTATCTCTCTGTTATTAAGACACTAATGCCAGAGTCTTATGTTCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAGGAACTTGAGCACAAGCTGCAATTTATTGATTCTCAAAAAGAAACAGAAGGGAAATCTGATGTAGTTGATGCAAATATTCCATTTTCTGAGTTCTTCACTTTTCCTCAGTATTCAACAAGTGCTAGTGGCTGTGATAATTCTGTGGACTCAAATGAACAAGTATGTAAAGTTCAGTTTGGAATTGCTGATATAGAAGTAACAATGGTGGAAAGCCATGCAAATCTCAAGATAAGATCCAAAAAGAGGCCAAAACAGCTCTTGAAGATAGTATCAGATTTACACACCATGCGCCTCACAATCTTGCACTTAAATGTTACAACCACTGGTGAAATTATCCTATACTCTCTTAGTGTTAAGGTTGAAGATGATTGCAAGTTGGGATCAGTAGATGATATAGCTGCAGCTGTAAACCAAATATTGGATAGGATTCAACAAGAGGCAATGTTGAATTAA | 984 | 0.374 | MCWSEGERDMALEAVVYPQILQDPFGYGVKDLYHNNLFSGATNWGYENLLSLENEQNQKGEGSISFVENKTALSYDHLNELHNISNELSSEGTTHFSNTQNLDNSTSTSYRPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVIKTLMPESYVQRGDQASIIGGAINFVKELEHKLQFIDSQKETEGKSDVVDANIPFSEFFTFPQYSTSASGCDNSVDSNEQVCKVQFGIADIEVTMVESHANLKIRSKKRPKQLLKIVSDLHTMRLTILHLNVTTTGEIILYSLSVKVEDDCKLGSVDDIAAAVNQILDRIQQEAMLN | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal12g0602 | 327 | SMART | finulus | 134 | 185 | IPR011598 | GO:0046983 | |
Lal12g0602 | 327 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 128 | 191 | IPR036638 | GO:0046983 | |
Lal12g0602 | 327 | PANTHER | MAX DIMERIZATION, MAD | 10 | 327 | - | - | |
Lal12g0602 | 327 | Pfam | Helix-loop-helix DNA-binding domain | 129 | 180 | IPR011598 | GO:0046983 | |
Lal12g0602 | 327 | Gene3D | - | 118 | 199 | IPR036638 | GO:0046983 | |
Lal12g0602 | 327 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 128 | 179 | IPR011598 | GO:0046983 | |
Lal12g0602 | 327 | MobiDBLite | consensus disorder prediction | 90 | 108 | - | - | |
Lal12g0602 | 327 | MobiDBLite | consensus disorder prediction | 90 | 124 | - | - | |
Lal12g0602 | 327 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 10 | 327 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal12g0602 | Lal-Chr12 | 4343609 | 4345969 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal12g0602 | 10 | 297 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G72210 | 45.513 | 4.05e-71 | 221 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Lal12g0602 | HLH | 9.1e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal12g0602 | - | - | gmx:100782243 | 399.438 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal12g0602 | 12 | 4343609 | 4345969 | Lal12g0602 | 12 | 4343609 | 4345969 | ECH | |
Lal12g0602 | 12 | 4343609 | 4345969 | Lal13g0663 | 13 | 4309879 | 4312925 | LSH | |
Lal5g0132 | 5 | 1185272 | 1188916 | Lal12g0602 | 12 | 4343609 | 4345969 | PCT | |
Lal3g1478 | 3 | 20667448 | 20669552 | Lal12g0602 | 12 | 4343609 | 4345969 | PCT | |
Lal12g0602 | 12 | 4343609 | 4345969 | Lal5g0132 | 5 | 1185272 | 1188916 | PCT | |
Lal12g0602 | 12 | 4343609 | 4345969 | Lal3g1478 | 3 | 20667448 | 20669552 | PCT |