Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0601 ATGGAAGTTAACACTACGAAGAAGAACCATACTTACATAAGGCACCACTTGCATTCACAAAACCATAATCATCACCATAACCATCTCCATTTCCCCTCCACAACTGTTCTCATAACTATCACAACAGTTACCTTAGTTACAATCCTATTTACCATTTTTATGGTTATATTCTTGCTCCGTCGGCAAAAATCTTCTAGCAAAGATGGAACTTGCAAAGATAACAACAATAGAGTGCTTCATGAAAAAAACAGCAGGCTCATTGTTTCAACAACTTTAACCTTCACTTCTAGCCCAGATGTGAAGGGAGGGTGTCTTAATGGGGGAAATTTGAACATGACACCAGTGCCTAAATTTCGGGGGGTCCAAGTTTTCACATATAAGGAACTAGAAGTAGCCACAGATGGATTCAATGAAGCAAATGTGATTGGCAATGGAGGGTTTGGTTTGATGTATAGAGGGGTCCTAAAAGATGGCACTTTGGCTGCAATTAAATTGTTGATAAGGGAAGGTAAGCATGGAGAGCGTGCCTTCAGAACAGAGGTTGATCTCCTAAGCCGTTTACATTCTCCTTATTTGGTGGAATTACTTGGTTATTGTGCTGACCAAAACCATAGGCTATTAATATTTGAGTACATGCCCAATGGTACACTTCATCACTATCTTCATTCATCTAAAAATCAAACTCAACCGTTGGATTGGTGGGCCCGGATGAGGATAGCCCTTGATTGTGCCAGGGCCTTGGAGCTTCTGCATGAACATGCTGTTTCACCTGTGATCCACCGAGACTTCAAGAGTAACAATGTTCTACTGGATCATAATTTCCGTGCCAAGGTGTCAGATTTTGGATTGGCAAAAATGGGTTCTGAGAAGATGAACGGTCAGGTTTCCACCCGTGTGTTAGGGACCACTGGATATTTGGCACCAGAGTATGCCTCCACAGGCAAACTTACTACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTTGAACTGCTGACAGGACGTGTTCCAGTTGATATTAAACGAGCCCCAGGAGAACATGTCCTTGTCTCTTGGGCTATCCCAAGATTAACAAACAGAGAAAAAGTGGTAGAAATGGTTGACCCAGCTCTACGTGGACAATACTCTAAGAAGGATTTAATTCAGATAGCTGCCATTGCAGCAATGTGTATACAGCCAGAAGCAGATTATAGACCACTCATGACAGATGTTGTACAATCTCTGATACCACTTGTTAGGAACCCGTCTTCGCTTCGTTCGTCAAGTTCTCTTAGATTTCAGAGACAAACACCGAGTCCAACTCATTAG 1311 0.4218 MEVNTTKKNHTYIRHHLHSQNHNHHHNHLHFPSTTVLITITTVTLVTILFTIFMVIFLLRRQKSSSKDGTCKDNNNRVLHEKNSRLIVSTTLTFTSSPDVKGGCLNGGNLNMTPVPKFRGVQVFTYKELEVATDGFNEANVIGNGGFGLMYRGVLKDGTLAAIKLLIREGKHGERAFRTEVDLLSRLHSPYLVELLGYCADQNHRLLIFEYMPNGTLHHYLHSSKNQTQPLDWWARMRIALDCARALELLHEHAVSPVIHRDFKSNNVLLDHNFRAKVSDFGLAKMGSEKMNGQVSTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEHVLVSWAIPRLTNREKVVEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVVQSLIPLVRNPSSLRSSSSLRFQRQTPSPTH 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0601 436 Gene3D Transferase(Phosphotransferase) domain 1 212 425 - -
Lal12g0601 436 CDD STKc_IRAK 142 412 - -
Lal12g0601 436 PANTHER OS01G0750732 PROTEIN 5 434 - -
Lal12g0601 436 SUPERFAMILY Protein kinase-like (PK-like) 117 409 IPR011009 -
Lal12g0601 436 ProSiteProfiles Protein kinase domain profile. 136 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0601 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Lal12g0601 436 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 5 434 - -
Lal12g0601 436 Gene3D Phosphorylase Kinase; domain 1 110 211 - -
Lal12g0601 436 Pfam Protein tyrosine and serine/threonine kinase 140 409 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0601 Lal-Chr12 4318609 4321991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0601 104 434 Receptor kinase-like Gene Family AT3G58690 62.426 5.41e-150 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lal12g0601 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0601 - - gmx:100809810 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0601 12 4318609 4321991 Lal12g0601 12 4318609 4321991 ECH
Lal12g0601 12 4318609 4321991 Lal13g0660 13 4263952 4268082 LSH