Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0599 ATGACATATGGAGTAACACTTTTTAGGACACCAGACCAGATGTTGTCCCAAAATGAACTTGCTTATCAGCATATTCATCAACAGCAAGAGCAGCTACTTCAGAAACAGCTCCAAACTTGTAGGGCAAACCAATACCAAGAAATTGAGAAGGATACTGATTTCAAGAACTACGACCTTCCGTTGGCGAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTTCGAATGATATCGGCTGAGGCGCCGGTCATATTTTCAAGGGCATATGAGATGTTCATATTAGAATTAACCTTGAGCTCATGGAACCACACGGAAGAGAACAAAAGAATAACACTTGGAAAGAATGACATCGCTGCAGGCTGCAGCTATCAATAG 375 0.4213 MTYGVTLFRTPDQMLSQNELAYQHIHQQQEQLLQKQLQTCRANQYQEIEKDTDFKNYDLPLARIKKIMKADEDVRMISAEAPVIFSRAYEMFILELTLSSWNHTEENKRITLGKNDIAAGCSYQ 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0599 124 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 12 120 - -
Lal12g0599 124 Pfam Core histone H2A/H2B/H3/H4 11 118 IPR007125 GO:0003677
Lal12g0599 124 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 12 120 - -
Lal12g0599 124 SUPERFAMILY Histone-fold 38 118 IPR009072 GO:0046982
Lal12g0599 124 Gene3D Histone, subunit A 20 123 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0599 Lal-Chr12 4301091 4301465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0599 43 122 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.500 1.01e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal12g0599 Histone 1.9e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0599 K08066 - csin:114298558 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0599 12 4301091 4301465 Lal13g0659 13 4257679 4260262 ECH
Lal12g0599 12 4301091 4301465 Lal12g0599 12 4301091 4301465 ECH
Lal12g0599 12 4301091 4301465 Lal13g0659 13 4257679 4260262 LSH
Lal5g0134 5 1214248 1217142 Lal12g0599 12 4301091 4301465 PCT
Lal18g0347 18 2975284 2977927 Lal12g0599 12 4301091 4301465 PCT
Lal12g0599 12 4301091 4301465 Lal5g0134 5 1214248 1217142 PCT
Lal12g0599 12 4301091 4301465 Lal18g0347 18 2975284 2977927 PCT