Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0590 ATGTCTCACTCTCAAACCCAACAAACCCTAATCTCACTCGATTCCCCTGAACCCAACGTAACGCTCCCGAACCCGTTTTCCAATTCCGACCCGACCCGAATCCCCACCCTCTTTCACGTCTCCTTCAACCAGGACTCCGGCTGCTTCGCTGCATGTACCGACCGCGGCTTCCGCATCTTCAACTGCGATCCCTTCCGCGAGATTTTCCGCCGAGACTTCGTTCCCGGCGGCGGAATCGGCCTTGTCAGCATGCTCTTCCGGTGCAACATCCTCGCCTTCGTCGGCGGCGGTCCTGACCCGCTGCATCCGATCAATAAGGTCATGATTTGGGACGATCACCAGTCGCGGTGCATTGGAGAACTCTCTTTCCGATCGGAGGTGAAAGGTGTTCGCCTCCGGAGGCACGAGATCGTGGTGGTTCTAGGGCACAGGATTTTCGTGTACAATTTCGCTGATCTTAAGACAATCCCGAACCCTAAGGGGCTTTGCGAGGTTTCGCATTTGGGGACAATGGTGTTGGCGTGCCCTGGGTTACAGAAGGGTCAAGTAAGAGTGGAGCATTACGCGCTGAAGAGGACTAAGTTCATAATGGCGCATGATTCGAGAATCGCGTGTTTCGCGCTCACACAGGATGGGGGATTGCTCGCTACAGCAAGCAACAAAGGGACCCTTGTTAGGGTTTTTAATACTTTGGATGGTTCATTGTTACAAGAGGTGGTGCGCAGAGGTGCTGACCGAGCAGAAATATACAGCCTTGCTTTCTCTCATACTGCACAGTGGCTAGCTGTCTCGAGTGACAAGGGAACTGTTCATGTCTTCAATCTAAAGGTTGATTCAGGACTATTGGGGCATGACAGATTACATAGCACATCTGACTCTAATCCTGCTAGCCCAAAACCACTTTCATCTCTTTCAATTTTTAAAGGTGTGTTACCAAAGTACTTTAGCTCAGAGTGGTCTGTTGCTCAATTTCGCTTGCCTGAAGGCTTGCAACATGCTGTTGCCTTTGGCCATCAAAAGAATACAATTGTAATACTCGGCTTGGATGGCAGCTTCTACAGATGCCAGTTTGATTCTGCCATGGGAGGAGAGATGACACAACTTGAATATTACAACTTCCTGAAGCCAGAGGAGACATTCTAG 1143 0.5048 MSHSQTQQTLISLDSPEPNVTLPNPFSNSDPTRIPTLFHVSFNQDSGCFAACTDRGFRIFNCDPFREIFRRDFVPGGGIGLVSMLFRCNILAFVGGGPDPLHPINKVMIWDDHQSRCIGELSFRSEVKGVRLRRHEIVVVLGHRIFVYNFADLKTIPNPKGLCEVSHLGTMVLACPGLQKGQVRVEHYALKRTKFIMAHDSRIACFALTQDGGLLATASNKGTLVRVFNTLDGSLLQEVVRRGADRAEIYSLAFSHTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRLHSTSDSNPASPKPLSSLSIFKGVLPKYFSSEWSVAQFRLPEGLQHAVAFGHQKNTIVILGLDGSFYRCQFDSAMGGEMTQLEYYNFLKPEETF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0590 380 SMART WD40_4 27 61 IPR001680 GO:0005515
Lal12g0590 380 SMART WD40_4 232 274 IPR001680 GO:0005515
Lal12g0590 380 SMART WD40_4 189 229 IPR001680 GO:0005515
Lal12g0590 380 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 21 380 - -
Lal12g0590 380 MobiDBLite consensus disorder prediction 1 26 - -
Lal12g0590 380 PANTHER AUTOPHAGY-RELATED PROTEIN 18A-LIKE ISOFORM X1 21 380 - -
Lal12g0590 380 SUPERFAMILY WD40 repeat-like 38 355 IPR036322 GO:0005515
Lal12g0590 380 Pfam WD domain, G-beta repeat 248 274 IPR001680 GO:0005515
Lal12g0590 380 Gene3D - 33 362 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0590 Lal-Chr12 4254730 4258067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0590 K22991 - gmx:100787427 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0590 12 4254730 4258067 Lal13g1040 13 7684761 7687587 LSH