Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0588 ATGGCACCAGCGAGGAAATCTAGAAATGTTAATAAGCGATTTTCAGCTTCAAATGAGGTTTCTCCTGAGAAAGATGGAGTTAACTCAATTAAAAACAAGTTACGGAAGAAAAAGTTGACTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAACTAGAACAATTTTATCAAGCATACAGGAAGTATGATAAAGACTGGAAGAAGGTGGCTGCTGTTGTACGTAACAGATCCATCGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTCATAGCTATGATGACAGATCACTACAATGTGCTGGTTGGGAGTGATAGTGAAAGGGAGAGCAATGATTCACCAGGATCTCGAAAACCTTTGAAACGAAAGATTGAAAAAGTACAGCTTAGTGTTTCAAAAGATTCTGTTCAGTCTCAGTCGATTCCTTCCAGTGATGGCTGCCTCTCTCTATTGAAGAAGAGACGCTTTGATGGTATACAGCCTCGAGCTGTTGGGAAAAGGACACCCCGTGTCCCAGTTCACTACTCCTGCAAGAAAGATGATAGGGAAAACTATGTTTCACCCAATAAAAGAAGCCCGGGGTCAACTGTTGTTGCTAATGATGATGAAATTGCACATGTAGCAGCTTTGGCATTAGCTGAGGCGGCACAAAGGGGTGGCTCTCCCCAAGTTTCTCAAACACCGCAGATAAGAGCAGAGCATAAGTCCCCTCATGTTCAGAACTTGGAAAGAATGTGCCAAACGTTGGAGACAGCTTGTGCCAAGTTTCATCGTGCTTCTGTGGATGAAGAGTTCTTGGAAGGTAGCATGGAAAGCAGGGGAGCTGAAAATGGAGAATATGTGAGAGATTCTAGTTCCTTAATGGATATGGAAGGCAAAGACTCTGTTGTTCTTCAGAAGGGAAAAATGATTTACAGAAAGAAAGAGAGAGTGGTAAACATTGGAAACCATCAGCTTGATGATGGTGGAGAAGCATGTAGCGGCACTGAAGAAGGACTCAGTTTTAGTTCTTTGAAAGGAAAGGTTGATATTGAGGTTAATAATGCAAAACTTGAGCAGCCCTCTCTAAAAAGTAAGAGGAAAAGAAGCAAGAAACTCTTTTTCGGAGATGAAATCCCTGCCTTGGATGCTTTGCAAACCTTGGCTGATGTCTCTCTAATGATGCCAGCATCTATGGTAGAATCTGAATCATCTGGCCAAGTGAAGGGAGATATAGTGACTGTTGATAAAGGTGATAAATCTGCTTTACCTGAAGCTGCATCAACAAGCCATACCAGAGATAAAATAAAACTCCCAGGTTCAAAACAAAAGGATGCTCATGTGGTCTCTGGAATTGAGGTTTCAACCCCCACAAAATCTAAACTTGGAAAGGAATCGGCAAATGATACTAAAGCTCTCTATGAATCGAAAGAGCAACTTTCCCCTGCTGATCGAACATGGAAAAGAAAGCGGAATTCTGTGGTTTCTAAGGTTGCAAGTACAAAGCTTAATCCTTACCCAAATGATCCCTTGAAGAGTGAGGATGTAGATGGAGAAAACAAACCTTTGTTTAAAGAAAAAAATACTGATCAGGTTTTCACCCAACCAAGACAATTGAATACAGTCAGATCGTCAGAGAGTTCCCTGTATACTGATCAGACGGATATGAAAGTATCAACTGCAGAAATTCCACTTTTGAGTGAAGTTAGTTTACCAATTAAAGGAAGAAGGAGATGGAAAATGATTTCACAGAGAACATTCATACCTAAAGAGAAGCCTTCTGAGAACATCATATTGAAAACTCAACATAATATGTACTCTACCTTAAAGGATAAGCTTTCTAGTTGCATGTCATCTTATCTGTTCCGCAGATGGTGTACTTTTGAATGGTTTTATAGTGCTATTGATTATCCATGGTTTGCCAAAAGGGAATTCATGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGACTAACTCGTGATGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACACTTTCTACGTGAAGAAAGACAAAAACTTGAACAATATCGGGAATCAGTGAGGAAACATTACACTGAACTGCGGACTGGTGTCAGTGATGGACTTCCAACAGATTTAGCTAAACCATTATATGTTGGACAACGAGTAATTGCTCTTCACCCAAAAACAAGAGAGATTCACGATGGTAGTGTGCTTACAGTTGACCATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGGGTTGAATTTGTCCTGGACATTGATTGCATGCCTTCGAATCCATTAGATAATATGCCTGAAGCTCTGAGGAGGCAGGTCAGTGCCAGAAAAGTCTCTTTGATGAGTAAAGAGCCACAGGTTAATGGAAATCCAAGTTTTGGAGGATGCACTATACGTGCTTCACCTGTGAAGGGGGATGTTAACCATTGTGTTTCTCAAGCAAAGGCTGCTACAATTGATAACCTCTGTGTACAGAAAACAGTTTGTGCTCAACCATGCACCATGACTCATCATCAAGCTAAGGAAGCTGATATACATGCACTTTCTGAGCTAAAGCGTGCTCTGGATAAAAAGGAAACATTGCTGATGGAGCTTAAAAGTGCAAATACTGACATTTTGGAAAACCAAAATGATATTGAATGCTTAAAAGATTCCGAGGCTTTCAAGAAGCATTATGCCACGGTTTCTGATGCTATGGTTCATTTGAGGCAACGCAATACTTACACTGGAACCTCTCTAACACCATGGATGAAGCCCCAAGTTAGTTTCAATGATCATGATAACCTTCCTGGTATGTTGGATAGTTTTCTACCACACGAATTAGGGTCAACCGTCAATGAAATTATTAAAGGATCCAGGCTAAGCGCAAATGCAATGGTGGATGCTGCATTTCAGGCACTGTCTTCAACAAAGGAAGATGAAGATACTTTCACAAGGATTGGACAGGCACTGGATTCTATTGATTATCAGCCGTTAGCCTCCAACACTAGGTTACCTATGATCAGGTCTCAAGAACAAGTGACTGGGAGTTCTTATCATCATAATCAGTCAACTGGCTGTGTCTCAGTGCCTTTACTTAACAATGCATCTGGTCCAAAACTGCATAATGATTCTAACAAAGTTTACACTGAAATTCCTTTGGAGCTCATTACTTCATGTGTTGCAACATTAATCATGATACAGACTTGCACTGAACGGCAATACCCTCCAGCTGATGTGGTTCAGATGCTAGATTCTGCTGTTACTAGTTTGCAACCATGCTCTCCTCAAAACATTCCTATATTCAGAGAAATTCAAATGTGCATAGGAAGAATTAAGACTCAGATTTTAGCTCTAGTCCCTACTTGA 3405 0.4097 MAPARKSRNVNKRFSASNEVSPEKDGVNSIKNKLRKKKLTDKLGSQWSKEELEQFYQAYRKYDKDWKKVAAVVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLVGSDSERESNDSPGSRKPLKRKIEKVQLSVSKDSVQSQSIPSSDGCLSLLKKRRFDGIQPRAVGKRTPRVPVHYSCKKDDRENYVSPNKRSPGSTVVANDDEIAHVAALALAEAAQRGGSPQVSQTPQIRAEHKSPHVQNLERMCQTLETACAKFHRASVDEEFLEGSMESRGAENGEYVRDSSSLMDMEGKDSVVLQKGKMIYRKKERVVNIGNHQLDDGGEACSGTEEGLSFSSLKGKVDIEVNNAKLEQPSLKSKRKRSKKLFFGDEIPALDALQTLADVSLMMPASMVESESSGQVKGDIVTVDKGDKSALPEAASTSHTRDKIKLPGSKQKDAHVVSGIEVSTPTKSKLGKESANDTKALYESKEQLSPADRTWKRKRNSVVSKVASTKLNPYPNDPLKSEDVDGENKPLFKEKNTDQVFTQPRQLNTVRSSESSLYTDQTDMKVSTAEIPLLSEVSLPIKGRRRWKMISQRTFIPKEKPSENIILKTQHNMYSTLKDKLSSCMSSYLFRRWCTFEWFYSAIDYPWFAKREFMEYLNHVGLGNIPRLTRDEWSVIKSSLGKPRRFSEHFLREERQKLEQYRESVRKHYTELRTGVSDGLPTDLAKPLYVGQRVIALHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFVLDIDCMPSNPLDNMPEALRRQVSARKVSLMSKEPQVNGNPSFGGCTIRASPVKGDVNHCVSQAKAATIDNLCVQKTVCAQPCTMTHHQAKEADIHALSELKRALDKKETLLMELKSANTDILENQNDIECLKDSEAFKKHYATVSDAMVHLRQRNTYTGTSLTPWMKPQVSFNDHDNLPGMLDSFLPHELGSTVNEIIKGSRLSANAMVDAAFQALSSTKEDEDTFTRIGQALDSIDYQPLASNTRLPMIRSQEQVTGSSYHHNQSTGCVSVPLLNNASGPKLHNDSNKVYTEIPLELITSCVATLIMIQTCTERQYPPADVVQMLDSAVTSLQPCSPQNIPIFREIQMCIGRIKTQILALVPT 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0588 1134 MobiDBLite consensus disorder prediction 10 25 - -
Lal12g0588 1134 Pfam DIRP 637 738 IPR033471 -
Lal12g0588 1134 MobiDBLite consensus disorder prediction 232 252 - -
Lal12g0588 1134 SMART sant 43 91 IPR001005 -
Lal12g0588 1134 Coils Coil 867 890 - -
Lal12g0588 1134 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1134 IPR028306 -
Lal12g0588 1134 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Lal12g0588 1134 MobiDBLite consensus disorder prediction 233 248 - -
Lal12g0588 1134 SMART DIRP_2 638 739 IPR033471 -
Lal12g0588 1134 MobiDBLite consensus disorder prediction 426 500 - -
Lal12g0588 1134 PANTHER LIN-9 1 1134 IPR010561 GO:0006351|GO:0017053
Lal12g0588 1134 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Lal12g0588 1134 MobiDBLite consensus disorder prediction 1 32 - -
Lal12g0588 1134 CDD SANT 47 81 IPR001005 -
Lal12g0588 1134 Gene3D - 4 99 - -
Lal12g0588 1134 SUPERFAMILY Homeodomain-like 40 90 IPR009057 -
Lal12g0588 1134 Coils Coil 690 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0588 Lal-Chr12 4220945 4235018 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal12g0588 DIRP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0588 - - gmx:100789533 1569.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0588 12 4220945 4235018 Lal13g0648 13 4191652 4197596 LSH