Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0585 ATGGGGCGTTTTTCATCTATGTTCAATGGCTTAACAGAGTCATTTTCAATGAAGAAAACTAAGAGATCTGGTAGATGTAGTGGAAGAGAAGCTGCAGAAACAATGGCAAAAGAAGCTAAAAAAAATGACTCCTTACTATGTAGCTCAGGCACTGTTCACGTTGATGGTTCAAACAACTTAGCCTCAGTTTTCTCTAAAAAAGGCCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAAGAATTTGGGTGCCAAGAGGACATGATATTCTGTGGGATATTTGATGGGCATGGTTCATGGGGACACTATGTGGCTAAAACAGTAAGAAAGTCAATGCCACCATCTTTGTTATGTAATTGGCAGGAAACACTTTCTCAAGATATTGATGTAGAGACAGAGAAAACACAACACAGGTTTAATATATGGAAACACTCTTTCTTGAAGACATGTGCTGCCATTGATCTAGAACTAAAGCAGAATAGAAAGATTGATTCATTTTTCAGTGGAACAACTGCACTCTCAATTGTCAGACAGGGTGAACTGATTGTGATTGCAAATGTTGGAGACTCACGTGCTGTATTAGCTACAACATCAGATGAAGGAACTTTGATACCAGTTCAACTAACACTAGATTTCAAGCCCAATTTGCCTCAGGAAGCAGAGAGAATTATGGAGTGCCAAGGGAGAGTGTTCTGCTTAGAAGACGAGCCAGGGGTGCATAGGGTTTGGATGCCTAACGAAGAGTCTCCTGGACTAGCCATGTCTAGAGCTTTTGGTGACTACTGCATCAAAGATTATGGTCTTATTTCAGTGCCTGATATAACACACAGAAACATAACCAGCACTGATCACTTTGTTGTGCTAGCTACTGATGGGGTGTGGGATGTGATATCAAATCAAGAAGCGGTGGATATTGTGTCTTCAACAGCAGAGAGAGCAAAATCAGCAAAACGTTTAGTGGAGTATGCAATGCATGCATGGAAACGAAAGAAAAGGGGTATTGCCATGGATGACATTTCAGCTATTTGTCTCTTTTTTCACTCTTCACTTTCACTTCACCATGTTAATCAAATTGCCACCCTTAAATAG 1092 0.4066 MGRFSSMFNGLTESFSMKKTKRSGRCSGREAAETMAKEAKKNDSLLCSSGTVHVDGSNNLASVFSKKGQKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGSWGHYVAKTVRKSMPPSLLCNWQETLSQDIDVETEKTQHRFNIWKHSFLKTCAAIDLELKQNRKIDSFFSGTTALSIVRQGELIVIANVGDSRAVLATTSDEGTLIPVQLTLDFKPNLPQEAERIMECQGRVFCLEDEPGVHRVWMPNEESPGLAMSRAFGDYCIKDYGLISVPDITHRNITSTDHFVVLATDGVWDVISNQEAVDIVSSTAERAKSAKRLVEYAMHAWKRKKRGIAMDDISAICLFFHSSLSLHHVNQIATLK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0585 363 SUPERFAMILY PP2C-like 54 348 IPR036457 -
Lal12g0585 363 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 354 - -
Lal12g0585 363 Gene3D - 51 349 IPR036457 -
Lal12g0585 363 ProSiteProfiles PPM-type phosphatase domain profile. 60 347 IPR001932 -
Lal12g0585 363 SMART PP2C_4 51 345 IPR001932 -
Lal12g0585 363 PANTHER ALPHABET, ISOFORM E-RELATED 1 354 - -
Lal12g0585 363 Pfam Protein phosphatase 2C 75 325 IPR001932 -
Lal12g0585 363 CDD PP2Cc 61 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0585 Lal-Chr12 4190478 4194050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0585 1 348 PP2C-type Phosphatase Gene Family AT3G05640 72.857 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0585 - - gmx:100808955 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0585 12 4190478 4194050 Lal12g0585 12 4190478 4194050 ECH
Lal3g1441 3 20341934 20346405 Lal12g0585 12 4190478 4194050 PCT
Lal18g0368 18 3135445 3139477 Lal12g0585 12 4190478 4194050 PCT
Lal3g0485 3 3434084 3436516 Lal12g0585 12 4190478 4194050 PCT
Lal12g0585 12 4190478 4194050 Lal3g1441 3 20341934 20346405 PCT
Lal12g0585 12 4190478 4194050 Lal18g0368 18 3135445 3139477 PCT