Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0584 ATGTCTTCTTTGAGCAGAGAGTTGGTGTTTCTCATTCTTCAGTTTCTGGAGGAGGAGAAGTTCAAGGAATCGGTGCATAAGCTTGAGAAAGAGTCAGGGTTTTACTTCAACGTAAAGTACTTTGAGGAGAAAGTGCAGGCTGGTGAATGGGATGAAGTTGAGAAGTACTTATCAGGATTTACCAAAGTTGATGATAATAGATACTCTATGAAAATATTCTTTGAAATAAGGAAGCAGAAATATTTGGAAGCACTTGATCGACAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGCGATTTAAAAGTATTTTCCACCTTCAATGAGGAACTGTACAAAGAAATCACCCAACTGTTAACTCTTACTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGCATAATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTGTTCCGTGATAAGCTTATCTTCCCGACTCTTAAGTCATCAAGATTACGCACTTTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAAAACCCAAGGCCAAACCCAGATATAAAAACATTATTCACAGATCACTCATGTACACCTTCTAATGGTCCACCTTTGGCACCTGCACCTGTCAATCTTCCGATTTCAGCAGTTGCAAAGCCCACTGCTTATACTTCACTTGGAGTTGGAGCTCATGGCCCGTTTCCACCTGCTGTTGCACCGGCTAATGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGTCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCTCAGCATCTACCATACCAGCCCCACAAAATCAAGTGTCTATCTTGAAACGTCCTAGAACTCCTCCAACAACTCCTGGGATGGTTGATTATCAAAATGCTGATCATGAACAGCTAATGAAAAGATTCCGGCCTGGTCATTCTGTTGAGGAGGTTTCCTATCCTTCAGCTCGACAAGCCTCTTGGTCACTAGATGATCTCCCAAGAACGGTGGCAATGACTTTGCATCAAGGATCTTCTGTAACGAGCATGGATTTTCATCCTTCTCACCACACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATCACCCTCTGGGATCTCAGCTTGCGAGAGAAGTTGGTTTCAAAGCCATTCAAGATATGGGATATGCAGTCATGCTCATTGCCATTTCAGGCAGCTGCGGTTAAAGATGCACCTATTTCTGTCAGCCGTGTCACTTGGAGCCCTGATGGGAATTTTGTGGGTGTTGCTTTTACTAAACATTTGATTCACTTACATGCCTATACTGGATCAAATGATCTAGCCCAGCGTATAGAGGTTGATGCCCATATTGGTGGTGTGAATGATTTGGCATTTGCTCATCCAAATAAACAGCTGTGTATTGTGACTTGTGGGGATGATAAGTTGATAAAGGTGTGGGATTTAAATGGACGAAGACTATTTCACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCCTGGTTATACGATAACATGGGTTCTAGGGTTGACTATGATGCTCCAGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGACTGTTTTCTTGTGGGACGAGTAAGGATGGAGAGTCCTTTCTTGTTGAATGGAATGAGAGTGAAGGAGCCATTAGGAGAACATACAATGGATTCAGAAAGAAATCTACTGGTGTTGTGCAGTTTGACACAACTCAAAATCGCCTTTTGGCTGCAGGGGAAGATGGTCAAATAAAGTTTTGGGACATGGACAATATTAATCTTCTAACAAGTACTGATGCGGATGGTGGATTACAGGGCCTTCCACGCTTGAGATTCAATAAGGAAGGGAATATTCTTGCTGTTACTACTGTGGACAACGGATTCAAGATACTTGCAAATGCTACTGGTCTTAGATCCTTAAGAACAGTTGAAACTCATACATTTGAAGCATTGAGGCCACCCATTGAATCCACTGCAATCAAGGTATCTGGCTCTTCTACCATTAGCCCTATCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCTTGAGTCGGAGTGTAGAGAAACCAAGAACCGTGGAAGATGCAATAGATAGAACTAAACCATGGCAGCTGTCTGAAATTCTGGATCCTGTCCAATGTCGATTAGTTACCTTGCCTGACAGCACAGATTCTTCCATCAAGGTTGTTCGACTTTTGTATACGAATTCTGGTGTTGGTATTTTGGCACTTGGTTCAAATGGTATCCAGAAATTGTGGAAGTGGGCTCGCAGTGAGCAGAATCCCACTGGGAAGGCCACGGCCAGTGTTGTTCCACAACATTGGCAACCCCACAATGGTCTTCTTATGACAAATGATATCTCAGGTGTCAACCTTGAAGAAGCAGTTCCTTGTATTGCACTCTCGAAGAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCACTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCATCTACTTTCCTAGCTTTCCATCCCAAGGATAACAACATTATAGCCATCGGGATGGAGGATTCGACTATTCACATTTACAATGTCAGAGTGGATGAGGTAAAATCAAAATTGAAGGGTCATCAGAAGCGTATTACTGGGTTAGCCTTTTCAACGAATCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAAGCAATTCCAATACAACTCGCTGCAGGAAAATCACCTGTTGGTGATACACGAGTACAGTTCCATTCAGACCAACTTCGCTTATTGGTAGTCCATGAGACTCAATTGGCAATATATGATGCCTCTAAGATGGATCGCATTCGGCAGTGGGTTCCACAAGATTCTCTGTCTGCCCCCATATCATACGCGACATATTCCTGTAACAGCCAGTTAGTATATGCTACATTTTGTGATGCCAATGTTGGGGTTTTTGATGCCGATAGCTTGAGACTAAGATGTCGTATTGCACCATCAATATGCTTGTCACCGGCAGCTTCAAGTGGAAGCCAAGCTGTTTATCCTCTTGTGGTTGCAGCTCATCCTCTAGAACCAAACCAGTTTGCTGTTGGGTTAACAGATGGGTCTGTCAGAGTGATAGAACCCACTGAATCAGAAGGTAAGTGGGGATCTTCTCCACCTATTGACAATGGAATATTGATTAGGACAACATCGTCATCTACAACAAGCAACCACACCACCGATCAGTCCCAAAGATAA 3396 0.4284 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNVKYFEEKVQAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCTPSNGPPLAPAPVNLPISAVAKPTAYTSLGVGAHGPFPPAVAPANANANALAGWMANVSASSSVQAAVVSASTIPAPQNQVSILKRPRTPPTTPGMVDYQNADHEQLMKRFRPGHSVEEVSYPSARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWDLSLREKLVSKPFKIWDMQSCSLPFQAAAVKDAPISVSRVTWSPDGNFVGVAFTKHLIHLHAYTGSNDLAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLNGRRLFHFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIRRTYNGFRKKSTGVVQFDTTQNRLLAAGEDGQIKFWDMDNINLLTSTDADGGLQGLPRLRFNKEGNILAVTTVDNGFKILANATGLRSLRTVETHTFEALRPPIESTAIKVSGSSTISPINCKVERSSPVRPSPILNGVDPLSRSVEKPRTVEDAIDRTKPWQLSEILDPVQCRLVTLPDSTDSSIKVVRLLYTNSGVGILALGSNGIQKLWKWARSEQNPTGKATASVVPQHWQPHNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPKDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKAIPIQLAAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMDRIRQWVPQDSLSAPISYATYSCNSQLVYATFCDANVGVFDADSLRLRCRIAPSICLSPAASSGSQAVYPLVVAAHPLEPNQFAVGLTDGSVRVIEPTESEGKWGSSPPIDNGILIRTTSSSTTSNHTTDQSQR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0584 1131 Gene3D - 568 683 IPR015943 GO:0005515
Lal12g0584 1131 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 351 951 IPR011047 -
Lal12g0584 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lal12g0584 1131 MobiDBLite consensus disorder prediction 1095 1131 - -
Lal12g0584 1131 PANTHER PROTEIN, PUTATIVE-RELATED 1 1131 - -
Lal12g0584 1131 SMART WD40_4 1059 1093 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 340 379 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 444 487 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 579 619 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 489 530 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 1002 1038 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 533 576 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 864 904 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 907 946 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 402 440 IPR001680 GO:0005515
Lal12g0584 1131 SMART WD40_4 810 861 IPR001680 GO:0005515
Lal12g0584 1131 SMART Lish 4 36 IPR006594 GO:0005515
Lal12g0584 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 597 628 IPR001680 GO:0005515
Lal12g0584 1131 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 911 1100 IPR011044 -
Lal12g0584 1131 Gene3D - 318 567 IPR015943 GO:0005515
Lal12g0584 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 474 488 IPR019775 -
Lal12g0584 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 914 955 IPR001680 GO:0005515
Lal12g0584 1131 SMART ctlh 34 92 IPR006595 -
Lal12g0584 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 914 949 - -
Lal12g0584 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 388 IPR001680 GO:0005515
Lal12g0584 1131 Pfam WD domain, G-beta repeat 913 946 IPR001680 GO:0005515
Lal12g0584 1131 Pfam WD domain, G-beta repeat 453 487 IPR001680 GO:0005515
Lal12g0584 1131 Pfam WD domain, G-beta repeat 348 379 IPR001680 GO:0005515
Lal12g0584 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 496 IPR001680 GO:0005515
Lal12g0584 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1131 IPR027728 GO:0006355
Lal12g0584 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 606 620 IPR019775 -
Lal12g0584 1131 Gene3D - 770 1102 IPR015943 GO:0005515
Lal12g0584 1131 MobiDBLite consensus disorder prediction 1109 1131 - -
Lal12g0584 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0584 Lal-Chr12 4170238 4183747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0584 - - gmx:100793575 2070.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0584 12 4170238 4183747 Lal12g0584 12 4170238 4183747 ECH
Lal12g0584 12 4170238 4183747 Lal24g0499 24 3510419 3531762 LSH
Lal3g1440 3 20323713 20333831 Lal12g0584 12 4170238 4183747 PCT
Lal18g0369 18 3146864 3157274 Lal12g0584 12 4170238 4183747 PCT
Lal12g0584 12 4170238 4183747 Lal3g1440 3 20323713 20333831 PCT
Lal12g0584 12 4170238 4183747 Lal18g0369 18 3146864 3157274 PCT