Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0582 ATGGTAAGGGGCAGAAAAGTTAGTAGCAAACACAATTCTAGAAACAGGGCTCGGTCTAAGGATGATGGGGTCTCTGATGATTCGGATGAGGACTATGTGGTTTCAGATGAAGGTAGAGATGTGTCTGATAATTCAGAGTATTATTGCTCCTCTTTTGATGGATGTGCATCGGAAGATAGTTTGGATAGTTTTATTGTGAAGGGGGAGGATGAAGAAGAGGAATTTCATGGTGTGGGGAATTCAAATAGATCCAAGGCTAGAAACACAAGAAAAGTCTTAAGAAAGGGGGGAAGGATTACACATGAAGAAGAAGAAGAGGAGGAGGAGGAAATTCAAGGAGTAAGGAATTTCAATAGATCAAGGGCAAGGAGTGGTGATTGCGGTCAGCAAAATAATGCAAGTAAAGCCTCACGAAAGAGAGGACGGATTGCATGTGCAGAACAATTAGAGGAGGAGGAGAAGGTGGATAGAGTTGGAGATGAGGAAGATGAAGAGAAGGTGGAGAGAGATGGAGAGGAGGATGAGGAAGGAACACAACTGCAGGTCAAAGAGGAAGAAGATGAAGATGATGAATATAAGGTGGAAGATGATGTAGATGAAGATGAATATAAGGTGGAAGATGATGTAGATGAAGATGAATATAAGGTGGAGGAGGAAGAGGAGGAGGGAGATGAGGACGATGAGGAGGACTTTGATTGTGAATATGATGATGAAATAACGCCCGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATGAGGATGCGAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTTTCACTGAAAAGGGCACCTGTAGTTTGTGTCAGAGGTCGGAAAAGGCAGAGTACAAGAGCATTAAAGAAGCCCTCGAGAAAACAAAGAAGAAAGAATGGGGGGTTTAGAAAGAGAGCAAGATGTGACAGTGAAGATGATTTTATAAATAATGGCACACCCATCAGGACAACAAGTAGGAAAAAAGGGGTCCGGAAGAGGAGAAAGCTTGTTCTTGCTGATTCAGGTTCAGATCATGTGTCTTCTGGATCATCTGATGTTGAATATACCATATCTGAAGAAGAGAGAGAACAGTTGAGAGAAGCCAATGAATTGTGTGGAAGATCTAGAAATAACTTGAGGAGTTCATCCCTTCTAACAAAAAGTGAAGAGGTTGGAGTCCATGATGATTTACATCAGCAACGCAAGCCTCCAGGTCGGAAGGGTAAGGAAAAGGTAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGTAGGATCAAAAAGTGAGGTGGTGAAGCAGGTGTGCGGAATTTGTCTGTCCGAGGAAGATAAAAGAAGAACAAGGGGAGTACTAGATTGTTGCACTCATTATTTTTGTTTTGCTTGCATTAATGAATGGGCAAAAGTGGAATCTCGGTGCCCTTTGTGTAAACAGAGGTTTAAAACAATCAGTAAGCCTGCACGATCAACAGGAGGGATTGATTTAAGAGAAGTGGTTATACAAATCCCTGAGCGTGATCAGGTTTATCAGCCATCTGAAGAAGAACTCAGGAGCTATATTGATCCATACGAGTCTGTTATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGGCCTAATGTTGCTATGTGATATTTGTGATTCTCCTTCACATACATATTGTGTTGGTTTGGGGCGTGAAGTTCCCGAAGGTAATTGGTATTGTGATGGTTGTCGGCCAGTTGCTTTGGGATCTTCAACCTACCAAGTACAAGAACGTCTGGCTGATCCAAGGGAGACAGTACAACCTACTAGACCGCCGCCCCTTGTTCTAAATGTATCCGAGAGTATAGACCTCAACTTGGAATCTTCACCACGGGCAGCTTTTAATCTAGGATTTGGGCAATTTTCATCTTCGAGATTTAGTGGCAGAAGTGTCCAAGGAGTTTCTCCAGTATCTGGAGGAGGGGCACCAACTTTATCAGGTAGGCGCTGGATCCACCGTCATATTCACCAGATTCTTTCGATGGATAGAATGACTTCTACAACTGGCAGGACTGATGTTATTCCAGCTACCAGTTCAACTAGTAACATATATGGCTCTCAAATTGTTCAAAGTGAGGAAATAACCACTCAACATATAAGGACACAGGATGTGGGAACATCACACCACACATTTTTTGATGAGACATTATGCAACAATAACGCCTCTCAGTTAATGCAGAACGGAGCATTATGGCCTGGACTCCTGGAGACACCCCCGATTCCAGATTGTGAACAAGTTCATCAGTTTAGCACATCAAACACTGTCCCTGATGGTAACTTGTCACCATTTGTCAGAGAAGGTAACTCTAACATTGCAATGGAGCAGTTGCAGTCAATGGTTAAAAGCCACCTAACGAGCTTGTCTCAAAATATTGATTTAGGTCATGATACTTTGAATGACATTGGAAAGAGTTCTATGCATACCATACTAGCAGCTTGTGGGCTTGAGCACAATCAGAGTGAGGTTTGCAATGTGCTCCCACCGCCCGTATGTCAGCATGTTGAACTAATGGCTTGTGCGCGAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTATAGGACATGTGGTGAAGAGGATTTTGGACACAAGAATTTCGTCACAGACACAGTGGTTAAAATTAGCACTTTAG 2676 0.426 MVRGRKVSSKHNSRNRARSKDDGVSDDSDEDYVVSDEGRDVSDNSEYYCSSFDGCASEDSLDSFIVKGEDEEEEFHGVGNSNRSKARNTRKVLRKGGRITHEEEEEEEEEIQGVRNFNRSRARSGDCGQQNNASKASRKRGRIACAEQLEEEEKVDRVGDEEDEEKVERDGEEDEEGTQLQVKEEEDEDDEYKVEDDVDEDEYKVEDDVDEDEYKVEEEEEEGDEDDEEDFDCEYDDEITPEEEDYSDEEEEMRMRKKKNNGMKMGKKVSLKRAPVVCVRGRKRQSTRALKKPSRKQRRKNGGFRKRARCDSEDDFINNGTPIRTTSRKKGVRKRRKLVLADSGSDHVSSGSSDVEYTISEEEREQLREANELCGRSRNNLRSSSLLTKSEEVGVHDDLHQQRKPPGRKGKEKVEEPQGRKGKEKVVGSKSEVVKQVCGICLSEEDKRRTRGVLDCCTHYFCFACINEWAKVESRCPLCKQRFKTISKPARSTGGIDLREVVIQIPERDQVYQPSEEELRSYIDPYESVICSECHQGGDDGLMLLCDICDSPSHTYCVGLGREVPEGNWYCDGCRPVALGSSTYQVQERLADPRETVQPTRPPPLVLNVSESIDLNLESSPRAAFNLGFGQFSSSRFSGRSVQGVSPVSGGGAPTLSGRRWIHRHIHQILSMDRMTSTTGRTDVIPATSSTSNIYGSQIVQSEEITTQHIRTQDVGTSHHTFFDETLCNNNASQLMQNGALWPGLLETPPIPDCEQVHQFSTSNTVPDGNLSPFVREGNSNIAMEQLQSMVKSHLTSLSQNIDLGHDTLNDIGKSSMHTILAACGLEHNQSEVCNVLPPPVCQHVELMACARTSLIKGCCSSCFDSFIGHVVKRILDTRISSQTQWLKLAL 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0582 891 MobiDBLite consensus disorder prediction 391 425 - -
Lal12g0582 891 PANTHER F18C1.6 PROTEIN 153 878 - -
Lal12g0582 891 SMART ring_2 438 479 IPR001841 -
Lal12g0582 891 MobiDBLite consensus disorder prediction 385 425 - -
Lal12g0582 891 ProSitePatterns Zinc finger RING-type signature. 457 466 IPR017907 -
Lal12g0582 891 SUPERFAMILY FYVE/PHD zinc finger 502 576 IPR011011 -
Lal12g0582 891 SUPERFAMILY RING/U-box 437 486 - -
Lal12g0582 891 MobiDBLite consensus disorder prediction 71 362 - -
Lal12g0582 891 CDD RING-HC_Topors 438 480 - -
Lal12g0582 891 SMART PHD_3 530 575 IPR001965 -
Lal12g0582 891 PANTHER F18C1.6 PROTEIN 153 878 - -
Lal12g0582 891 MobiDBLite consensus disorder prediction 1 45 - -
Lal12g0582 891 Pfam PHD-finger 530 576 IPR019787 -
Lal12g0582 891 MobiDBLite consensus disorder prediction 117 137 - -
Lal12g0582 891 MobiDBLite consensus disorder prediction 154 249 - -
Lal12g0582 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 580 IPR013083 -
Lal12g0582 891 ProSiteProfiles Zinc finger PHD-type profile. 528 577 IPR019787 -
Lal12g0582 891 ProSiteProfiles Zinc finger RING-type profile. 438 480 IPR001841 -
Lal12g0582 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 494 IPR013083 -
Lal12g0582 891 Coils Coil 360 380 - -
Lal12g0582 891 MobiDBLite consensus disorder prediction 284 305 - -
Lal12g0582 891 Pfam Ring finger domain 437 480 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0582 Lal-Chr12 4156727 4160775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0582 438 483 C3H Transcription Factor Family AT2G39100 43.478 1.48e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal12g0582 PHD 7.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0582 - - gmx:100797448 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0582 12 4156727 4160775 Lal12g0582 12 4156727 4160775 ECH