Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0581 ATGTCGTATCGTCCAACCGGGAACGCGAGGACGGATATCCGTCGTAACCGTTACAAGGTGGCGGTGGACGCCGAAGAAGGTCGCAGAAGGCGCGAGGACACGATGGTGGAGATCCGTAAGAACCGTAGAGAAGAGAGCTTGCAGAAGAAGAGGCGTGAGGGCCTTCCACCTCAGCAACTTCCTTCTTCTCTTAACTCTACTATTGTGGATAAGAAGTTGGAACACCTACCTACCATGGTTGCAGGTGTCTGGGCTGAAGACAATAACCTCCAGCTCGAGTCAACTACTCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGTCCACCAATCGAGGAAGTTATACAAACTGGTGTAGTTTCTAGGTTTGTTGAATTTCTGATGAGAGAAGACTTTCCACAGCTGCAGTTTGAGGCAGCATGGGCTTTGACAAATATAGCCTCTGGGACGTCTGAAAACACCAAGGTGGTAATTGATCATGGGTCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTCCTAGTGATGATGTCCGGGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCAAGATGCCGTGATCTTGTTCTTGGTCATGGGGCTTTGCTTCCTCTATTAGCACAACTGAATGAACATGCAAAGCTCTCCATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTTCTTTTGACCAGGTTAAACCTGCACTTCCTGCACTTGCTCGTCTTATTCATTCAAATGATGAAGAGGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTGATTGAATCTGGTGTTTGTCCCCGGCTTGTTGAGCTTCTGCTGCACCCATCCCCTTCGGTGCTAATTCCCGCTCTTCGTACAGTTGGAAATATTGTCACTGGAGATGATGTGCAAACTCAGGTTATCATCAACCATCAAGCTCTCCCCTGTCTTCTAAATCTGTTGACCAATAATTATAAGAAAAGCATAAAAAAGGAAGCTTGTTGGACCGTATCAAACATTACAGCTGGGAATAATCAGCAAATTCAGGCTGTAGTTGAGGCTAATATATTTGGTCCTTTGGTTAACCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGATCTCATGATCAAATCAAGTACCTGGTAAGTCAAGGGTGTATCAAGCCGTTGTGTGATCTCCTCATCTGTCCTGATCCTAGGATCGTGACAGTTTGCCTGGAAGGCCTTGAGAACATCCTGAAGGTAGGGGAAGCTGATAAAAATATGGGCACTACTGGTGACGTGAACCTGTATGCCCAAATGATTGATGATGCTGAGGGATTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATCTATGAAAAGGCAGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGAAGACGACGAGACTATGCCTCCTGGGGATGCTGCTCAATCAGGGTTCAACTTTGGTAGCACTGATGCTCCTTCTGTGCCTTCCGGTGGATTCAACTTTAATTAG 1602 0.4594 MSYRPTGNARTDIRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLPPQQLPSSLNSTIVDKKLEHLPTMVAGVWAEDNNLQLESTTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGSVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPSFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIESGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTVSNITAGNNQQIQAVVEANIFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGTTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDDETMPPGDAAQSGFNFGSTDAPSVPSGGFNFN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0581 533 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Lal12g0581 533 MobiDBLite consensus disorder prediction 513 533 - -
Lal12g0581 533 PANTHER IMPORTIN SUBUNIT ALPHA 3 523 - -
Lal12g0581 533 Pfam Atypical Arm repeat 458 506 IPR032413 -
Lal12g0581 533 PANTHER IMPORTIN ALPHA 3 523 - -
Lal12g0581 533 MobiDBLite consensus disorder prediction 502 533 - -
Lal12g0581 533 MobiDBLite consensus disorder prediction 24 52 - -
Lal12g0581 533 MobiDBLite consensus disorder prediction 24 63 - -
Lal12g0581 533 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Lal12g0581 533 Pfam Armadillo/beta-catenin-like repeat 317 358 IPR000225 GO:0005515
Lal12g0581 533 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Lal12g0581 533 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Lal12g0581 533 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Lal12g0581 533 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Lal12g0581 533 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Lal12g0581 533 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Lal12g0581 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Lal12g0581 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Lal12g0581 533 PIRSF Importin_alpha 6 532 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lal12g0581 533 Gene3D - 13 52 IPR036975 GO:0006606
Lal12g0581 533 Gene3D - 74 497 IPR011989 -
Lal12g0581 533 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Lal12g0581 533 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Lal12g0581 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Lal12g0581 533 SMART arm_5 234 273 IPR000225 GO:0005515
Lal12g0581 533 SMART arm_5 360 400 IPR000225 GO:0005515
Lal12g0581 533 SMART arm_5 275 315 IPR000225 GO:0005515
Lal12g0581 533 SMART arm_5 403 443 IPR000225 GO:0005515
Lal12g0581 533 SMART arm_5 317 358 IPR000225 GO:0005515
Lal12g0581 533 SMART arm_5 190 232 IPR000225 GO:0005515
Lal12g0581 533 SMART arm_5 149 189 IPR000225 GO:0005515
Lal12g0581 533 SMART arm_5 106 147 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0581 Lal-Chr12 4150303 4155549 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0581 K15042 - gmx:100789135 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0581 12 4150303 4155549 Lal13g0626 13 4064269 4069968 ECH
Lal12g0581 12 4150303 4155549 Lal12g0581 12 4150303 4155549 ECH
Lal12g0581 12 4150303 4155549 Lal24g0493 24 3468276 3474409 ECH
Lal13g0626 13 4064269 4069968 Lal12g0581 12 4150303 4155549 ECH
Lal14g1569 14 16293071 16297025 Lal12g0581 12 4150303 4155549 ECH
Lal7g0966 7 15967116 15971665 Lal12g0581 12 4150303 4155549 ECH
Lal12g0581 12 4150303 4155549 Lal13g0626 13 4064269 4069968 LSH
Lal12g0581 12 4150303 4155549 Lal24g0493 24 3468276 3474409 LSH