Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0580 ATGGGTAGCAATAGCAGGAACAGGAATAGGAATAAGAATGAACAAGATGAAAATATGGAATTAGAAAAAGCTCGATTACTCAGTTTAGCCATTGATTTCGGTTTCGATCATAACTCAGCCGTCAAATGTTTGGACCGTCTTATCGCTCTCTACGGTGATGATGGCCGAGATTTCATCACGGTGGAGCACTGCGGCGATGATTTTCTCACGGCTTTGGCCGAATCGATGGAAGCTTTGGAGGAATGGGATGATGTGGAGGAGATGGAATCACAAGCTTGTGGAACTTTAACTGATATACTTGATCATTCTAGTGTTGCCAATTGTGGTGATGATGCACAACATAATCATGATGCTGCTCATGCTTCGATCCCTTGCATTAATATAATTGATGATTCGCCTCCATCTCCGAAACACCAGAAGAAAGTAGTGGAGTTGGATTCAAGCGAGGACGATGATATCGACTGCAATGTTTCTATGGGTTGCAGGAGTGGCATCACGCAAGGTTCAGCTTCATCAACTTCCAAAAAATTATCATCACCATTAACATCAAAAGATAAAAGCCGTACTCTCACTTACGACGAATTGCAAGCTCTAGATGATATTGAATTGGCAAATGTTGTTATCTTTGGTAATAGGACATTACGACCATTGCAGCATGAAGCATGTAAAGTAGCTTTGGCCAAGCAAGATTCTTTTATTCTTATGCCTACTGGGGGTGGCAAATCTCTTTGCTACCAGCTTCCAGCAACTCTTCAACCAGGCGTTACAGTGGTTGTATCTCCCTTACTTTCACTCATTCAGGACCAGATAATCACACTAAACCTCAAATTTGGAATACCTGCTACTTTTCTAAATTCTCAACAAACTTCTTCCCAAGCCGCAGCTAAAAGACAAACCCTCATGCAAGCTCTTGGACAGCTAGCAAGTTTCGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCCGACTACCGGGAATTAGGATCTCTTAAGCGAATATTCCCAGATGTACCTGTCATGGCATTGACTGCTACTGCAACCCACTCAGTTCGTGAGGACATCTTAAATGCTTTAAGAATCCCACGTGCACTTGTCCTTGAGAGAAGCTTTGACAGGCCAAATTTGAAGTATGAAGTGATTGTAAAGACAAAGGAGGCACTGAAGCAGCTAGGACAGCTACTAATGGCTCGTTTCAGGAATGAGTGTGGAATTCTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCAAATTTTTTGAATGAGAAATGTAAGATTAAGACAGTGTACTACCATGCTGGGTTGGCTGCCCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCACAATGGAGAGGTCCATATCGTATGTGCGACTATTGCATTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTAATCCACAATACATTGTCAAAATCAATCGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAACCTTCCTGCTGTCTGCATTGCTCTATACCAGAAGAAGGATTTCAGTAGAGTTGTGTGCATGTTAAGAAATGGCCAGGGATATAAAAAGGAAAGGTTTAAGAGAGCAATGGATCAAGCCAAAAAGATGCAACAGTATTGTGAACTAAAGGTTGAATGCCGGAGACAAACTTTACTCCAACATTTTGGAGAATCTTTTGACAGAAAAGCCTGCAAGTATGGATCTAACCCCTGCGATAATTGTCTCAAGATTGCATTGTGA 1761 0.4208 MGSNSRNRNRNKNEQDENMELEKARLLSLAIDFGFDHNSAVKCLDRLIALYGDDGRDFITVEHCGDDFLTALAESMEALEEWDDVEEMESQACGTLTDILDHSSVANCGDDAQHNHDAAHASIPCINIIDDSPPSPKHQKKVVELDSSEDDDIDCNVSMGCRSGITQGSASSTSKKLSSPLTSKDKSRTLTYDELQALDDIELANVVIFGNRTLRPLQHEACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTSSQAAAKRQTLMQALGQLASFVVDEAHCVSQWGHDFRPDYRELGSLKRIFPDVPVMALTATATHSVREDILNALRIPRALVLERSFDRPNLKYEVIVKTKEALKQLGQLLMARFRNECGILYCLSKSECVEVSNFLNEKCKIKTVYYHAGLAARQRVAVQKKWHNGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMLRNGQGYKKERFKRAMDQAKKMQQYCELKVECRRQTLLQHFGESFDRKACKYGSNPCDNCLKIAL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0580 586 CDD SF2_C_RecQ 377 510 - -
Lal12g0580 586 PANTHER DNA HELICASE RECQ FAMILY MEMBER 39 583 - -
Lal12g0580 586 Gene3D - 197 299 IPR027417 -
Lal12g0580 586 Pfam DEAD/DEAH box helicase 216 275 IPR011545 GO:0003676|GO:0005524
Lal12g0580 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 521 IPR027417 -
Lal12g0580 586 SMART helicmild6 419 501 IPR001650 -
Lal12g0580 586 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 369 IPR014001 -
Lal12g0580 586 Pfam Helicase conserved C-terminal domain 392 500 IPR001650 -
Lal12g0580 586 PANTHER BLOOM SYNDROME PROTEIN 39 583 - -
Lal12g0580 586 Coils Coil 4 24 - -
Lal12g0580 586 Pfam RecQ zinc-binding 513 582 IPR032284 -
Lal12g0580 586 Gene3D - 300 376 IPR027417 -
Lal12g0580 586 SMART ultradead3 210 385 IPR014001 -
Lal12g0580 586 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 544 IPR001650 -
Lal12g0580 586 CDD DEXHc_RecQ 208 376 - -
Lal12g0580 586 Gene3D - 377 584 IPR027417 -
Lal12g0580 586 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 308 317 IPR002464 -
Lal12g0580 586 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 298 583 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0580 Lal-Chr12 4140172 4146484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0580 303 509 Eukaryotic Initiation Factors Gene Family AT5G11170 25.352 7.60e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0580 K10899 - gmx:100806070 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0580 12 4140172 4146484 Lal12g0580 12 4140172 4146484 ECH