Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0575 ATGAAAGGGAAGGAGCGGAAAATGTTTCCACTTCCAACACCATCCGATGCAACTCCTGCTGGTGGGTCAGTTGGAAACCACATTCCTCCTAATGAGTCGGACAGATTCTACATCAAACTCACTCACTTGTTGGAATCCACTGGACTCACTCTAATTGTCAATGTCCGAGAAACATTGCTGGACTTGTATGAATTTTACTTGGAGGTTACCAGAAGAGGAGGATTTCGTCAGGTTGGAAGAGAAAAGAAATGGGGTGAAGTTGTATCTGCACTAAAATTGGATGGAAATAATGCGAATCTATCTGATCAAGTTGAAAAGCTATATGCAAATGTTCTTTACCAGTTTGAGCAATTGTATTTCTATAGGGTTCGTGCAACGCAAGCTGATGCAGCTAACAAAACCGAAGGTCCACTTAAGAGGAAGTGGAGTACACTAGCTAGTTTATCTCCGGTAATGAATGTTCAAGATGGTTATATGGTGACAAAGATGTGCAAGGACCACCCTTGCCAAACCACAGCTTTTGGATTTCAAGCTCAAAGAAGGGCTGGATTTGTAGAACAGACAGTGGTTCTACCAGCAGTGGCAACCTCCAATGGCAGAAAGAAGAATAAACGTGCAGGTATTCCGCGGGGAAGGAGTGGATATCAGATTTTCCTCAATCAGGAATGTGCTCGATTGAAAACTTCTGGTCATGTCTTACGTGGCACTGCTGGCAGAACAATGATACGCATGGCTATTGATGCATGGAATAAGATGTCTGATACTGAGCAACAGCCATATGTGGAGGAAAGCAAAAAGAACAAGGAAAAGTTAAAGGAGGCAATGATCACTCCCAGTAAACAACAAAATACCATGCAAGAGAAGAGGCCTAGTGTTTGCGGTGACTGCCGTGTAACTTTGCAACCGGTGGCACATAACTCCCGTGACAGTACACCAGCATTTGACTTAGCTCCTAAAATGACTGAAAAAGCACCCAAGATTGAAGAATCCCTTACTATACACTCACTAGGTTTGGCCACTGAGAAATTCAACAGCAACATGGTTGGAGGAGTTGTATATCAGCCTTTCACACCTCTGTTACTACGGAAGCGATTGTTGCACAAGCAATCAAATAAAGTGCATAGAATAAATAGAAAAGAAGAAACAAGAGACTTTGGTAACGGGGTTCAGCCAATTGTGACTACATCTCTGGAAGCGTTGAGC 1203 0.4306 MKGKERKMFPLPTPSDATPAGGSVGNHIPPNESDRFYIKLTHLLESTGLTLIVNVRETLLDLYEFYLEVTRRGGFRQVGREKKWGEVVSALKLDGNNANLSDQVEKLYANVLYQFEQLYFYRVRATQADAANKTEGPLKRKWSTLASLSPVMNVQDGYMVTKMCKDHPCQTTAFGFQAQRRAGFVEQTVVLPAVATSNGRKKNKRAGIPRGRSGYQIFLNQECARLKTSGHVLRGTAGRTMIRMAIDAWNKMSDTEQQPYVEESKKNKEKLKEAMITPSKQQNTMQEKRPSVCGDCRVTLQPVAHNSRDSTPAFDLAPKMTEKAPKIEESLTIHSLGLATEKFNSNMVGGVVYQPFTPLLLRKRLLHKQSNKVHRINRKEETRDFGNGVQPIVTTSLEALS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0575 401 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 28 329 - -
Lal12g0575 401 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 28 329 - -
Lal12g0575 401 SMART ARID_2 27 116 - -
Lal12g0575 401 Pfam ARID/BRIGHT DNA binding domain 33 116 IPR001606 GO:0003677
Lal12g0575 401 Pfam HMG-box domain 209 275 IPR009071 -
Lal12g0575 401 ProSiteProfiles ARID domain profile. 30 120 IPR001606 GO:0003677
Lal12g0575 401 SUPERFAMILY ARID-like 30 120 IPR036431 GO:0003677
Lal12g0575 401 SUPERFAMILY HMG-box 200 275 IPR036910 -
Lal12g0575 401 SMART bright_3 31 121 IPR001606 GO:0003677
Lal12g0575 401 Gene3D High mobility group box domain 194 293 IPR036910 -
Lal12g0575 401 Gene3D - 26 140 IPR036431 GO:0003677
Lal12g0575 401 CDD HMGB-UBF_HMG-box 210 275 - -
Lal12g0575 401 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0575 Lal-Chr12 4103314 4107102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0575 36 276 ARID Transcription Factor Family AT3G13350 26.493 2.32e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal12g0575 ARID 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0575 - - var:108325455 291.967