Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0570 ATGGCCCCCAAATCCAAACCTTCCAAAACCTCTTCCCCTTCATCCCCAGCCACAGCACCCTTCAAGGCTGGCTTCGCCGTCGAGGTCAGTTCCGACGACGACGGTTTCCGTGGTTCTTGGTTTACGGGCAAGATCATCCGCCGCGTTGCCAATGATCGGTTTTTGATAGAGTATGACAACCTCATGGCCGACGAGGGCGGTTCGAAGCAGTTGAGAGAGGTTCTCAAACTCCACCAGCTCCGGCCGGTTCCACCGGCGGAGACTGGTCGGGAATTCAAGTTCGGCGATGAGGTTGACGCGTACCACAACGACGGGTGGTGGGAGGGTCACGTTACAGAAGAGTGTGGGAATGGAAGGTTCGCGGTGTATTTCAGAGTTTCGAGGGAGCAGATCGTGTTCCAGAAAGAAGAACTCAGACTCCACCGTGAGTGGTTCAATGAGAATTGGGTTCCTCCATTCGAAAACCAACAGCAGCAGCAAGAACAAGAGAAAGTGTTGTTGACACCAAATGTGAAGTCTGCTCAAAATGTGACACCAGATGTCAAGTCTGCTCAAACTGTGACACCAAATGTGAAGTCTGATGAAATTGTGAATGAGGAGGAAAGGTTTAGAGTAGGGACCCCAGTTGAGGTTAGCAGTGACGAAGAAGGTTTCCAAGGAGCTTGGTTTTCTGCCACTGTTGTTCAAGTGATAAGAAAAGGAAAGTTCCTTGTTGAGTACCAGAGCCTACTGGCTGATGATGATTCCCAGCTTTTAAGAGAGGAGGTTGATACCCACCACATAAGGCCTCATCCGCAACAAACTGTTGTTAATGGTCACTTTAGTCTTCTTGAAGAGGTTGATGCTTTTCACAACGATGGCTGGTGGATTGGCATGGTTTCTAAAGTTCTTGATAACGCAAGGTATGTAGTTTACTTCAGGAACAGCAGTGAAGAACTAGAGTTTCAGCACTCCCAGTTGAGGAAACACCAGGACTGGATTGATGGCAAATGGATCTTGACTTCAAAGGTGGACAAGGCAGAACAATCACATGATGAGCCAGCAGAAACGGTTAATAATCAGGAGAATATGCTGAGGAGAAGCTCAAGAGCAAGGTTCACTAGCAAAATTGTAAAGGATTTTGTGAGGGAGTGA 1134 0.4815 MAPKSKPSKTSSPSSPATAPFKAGFAVEVSSDDDGFRGSWFTGKIIRRVANDRFLIEYDNLMADEGGSKQLREVLKLHQLRPVPPAETGREFKFGDEVDAYHNDGWWEGHVTEECGNGRFAVYFRVSREQIVFQKEELRLHREWFNENWVPPFENQQQQQEQEKVLLTPNVKSAQNVTPDVKSAQTVTPNVKSDEIVNEEERFRVGTPVEVSSDEEGFQGAWFSATVVQVIRKGKFLVEYQSLLADDDSQLLREEVDTHHIRPHPQQTVVNGHFSLLEEVDAFHNDGWWIGMVSKVLDNARYVVYFRNSSEELEFQHSQLRKHQDWIDGKWILTSKVDKAEQSHDEPAETVNNQENMLRRSSRARFTSKIVKDFVRE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0570 377 SMART agenet_At_2 90 146 IPR014002 -
Lal12g0570 377 SMART agenet_At_2 272 328 IPR014002 -
Lal12g0570 377 SMART agenet_At_2 19 88 IPR014002 -
Lal12g0570 377 SMART agenet_At_2 201 269 IPR014002 -
Lal12g0570 377 MobiDBLite consensus disorder prediction 1 20 - -
Lal12g0570 377 Gene3D - 191 274 - -
Lal12g0570 377 Gene3D - 10 94 - -
Lal12g0570 377 PANTHER AGENET-LIKE DOMAIN, AGENET DOMAIN, PLANT TYPE-RELATED 18 166 - -
Lal12g0570 377 PANTHER AGENET-LIKE DOMAIN, AGENET DOMAIN, PLANT TYPE-RELATED 194 338 - -
Lal12g0570 377 MobiDBLite consensus disorder prediction 1 18 - -
Lal12g0570 377 Pfam Agenet domain 206 266 IPR008395 -
Lal12g0570 377 Pfam Agenet domain 26 85 IPR008395 -
Lal12g0570 377 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 18 166 - -
Lal12g0570 377 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 194 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0570 Lal-Chr12 4074433 4077013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0570 213 326 PHD Transcription Factor Family AT5G58610 29.412 2.39e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0570 - - lang:109346228 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0570 12 4074433 4077013 Lal12g0570 12 4074433 4077013 ECH
Lal12g0570 12 4074433 4077013 Lal13g0603 13 3922223 3928265 ECH
Lal12g0570 12 4074433 4077013 Lal13g0603 13 3922223 3928265 LSH
Lal12g0570 12 4074433 4077013 Lal24g0476 24 3353255 3356662 LSH