Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0566 ATGACATCTGTTGGTGCAGCACCAACATCAGGTTTGAGAGAAGCAAGTGGTCATGCTGCAGCAGGTGTTGATAGATTGCCAGAAGAGATGAATGACATGAAAATTAGAGATGATAGAGAAATGGAAGCTACAGTTGTTAATGGTAATGGAACTGAGGCAGGGCATATCATTGTGACTACTATTGGGGGTAGAAATGGTCAGCCAAAACAGACTATAAGCTATATGGCGGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAATGCTTGGAAACTGGTGAAACAGTAGCTATCAAAAAGGTTCTTCAAGACAAAAGATACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCTGTTTGAAGCATTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATCTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGTGTCATCAAACATTACAACAAGTTGAACCAAAGAATGCCACTGATATATGTGAAACTCTATACATACCAGATATTTAGAGCATTATCTTATATCCATTGCTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTTAATCCACATACCCACCAAGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGGCGAGCCAAATATATCATACATATGTTCTAGATACTACAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTATGGTCTGTTGGTTGTGTTTTAGCTGAACTGCTACTTGGACAGCCATTGTTCCCCGGCGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTTTGGGCACTCCAACAAGGGAAGAGATTAAATGCATGAACCCTAACTATACAGAATTTAAATTCCCTCAGATTAAAGCACACCCATGGCACAAGATCTTCCATAAGCGCATGCCGCCCGAAGCTGTTGATTTAGTATCAAGACTACTACAGTACTCCCCTAACCTGCGGTGCTCAGCTTTAGATGCCTTGACCCATCCCTTCTTTGATGAGCTTCGTGACCCAAATTCTCGCTTGCCAAATGGTCGATTCCTTCCACCACTATTTAATTTCAAATCTCATGAACTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGGTTCCAGAGCATGCAAGGAAGCAATGCCCATTTCTTGGCTTGTGA 1233 0.4177 MTSVGAAPTSGLREASGHAAAGVDRLPEEMNDMKIRDDREMEATVVNGNGTEAGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVCLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHCCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCSALDALTHPFFDELRDPNSRLPNGRFLPPLFNFKSHELKGVPVEILVKLVPEHARKQCPFLGL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0566 410 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0566 410 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0566 410 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Lal12g0566 410 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Lal12g0566 410 SUPERFAMILY Protein kinase-like (PK-like) 73 384 IPR011009 -
Lal12g0566 410 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0566 410 MobiDBLite consensus disorder prediction 1 28 - -
Lal12g0566 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 408 - -
Lal12g0566 410 PANTHER BNAC03G34380D PROTEIN 1 408 - -
Lal12g0566 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lal12g0566 410 CDD STKc_GSK3 69 361 IPR039192 -
Lal12g0566 410 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0566 Lal-Chr12 4053540 4057637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0566 80 386 MAP Kinase Gene Family AT2G43790 35.110 9.52e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lal12g0566 Pkinase 8.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0566 K00924 - gmx:100780226 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0566 12 4053540 4057637 Lal12g0566 12 4053540 4057637 ECH
Lal12g0566 12 4053540 4057637 Lal13g0598 13 3898721 3903249 ECH
Lal12g0566 12 4053540 4057637 Lal13g0598 13 3898721 3903249 LSH