Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0565 ATGGGTGGTGATCTTAAAACTGAGTTATCTCAGAAAACTTCAATTTTTGGTATTAAGGTTTGGGAAATAATTGGAATTGCAATTGGCTTTGGCATTATAGTGATCCTATGTGTTATCTCACTTTGCCTTACTTCAAGGAAGAAATCTAGAAAGACTAGTAACAAGATTCCAGTTACTCAAATACCTACTATCTCAAAGGAAATTAAGGAAGTGCAGCTTGAGGCAGTATCATCAAATGGATTTGTTCCTCCTAGTGATGGAATACTTGTTACAATTCATGATAAGTCCAGTGGCAGAGAATCAGACAAAGTTATGGTTCATTTAGGTGTAGGGAAGACAAGGCATGGAGATAGTAGCAGTCATTCGGATTCGTTTCATAAAAAATCGGAGAAAGATGGAGGAGGATCACAATCAGGGGAAGAAAGAAGATATGGCAGTGTTAAAGTATACAAACCCTCTTCTTCATACCCTATAACAGCTCCTTCACCTCTCTGTGGCCTTCCAGAATTCTCTCAATTGGGTTGGGGTCACTGGTTTACATTGAGGGATCTTGAACTTGCTACAAACCGGTTTTCTAAAGACAATGTCATCGGCGAGGGTGGATATGGAGTTGTTTACCAGGGACAGTTGATCAACGGGAATCCGGTGGCAGTTAAAAAGATACTTAATAACATTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACATAAAAATTTGGTTCGTCTTTTGGGATACTGCATTGAGGGTACTCACAGGATGTTAGTCTATGAGTTTGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGCCATCATGGTTATCTTACCTGGGAAGCGCGAATCAAGATCCTCCTTGGCACGGCCAAAGCGCTTGCATATTTGCATGAAGCAATTGAGCCTAAGGTGATACACCGAGATATCAAGTCAAGCAACATATTAATTGATGATGAATTCAATGCCAAGGTTTCTGATTTTGGCCTGGCTAAGTTACTTGGTGCTGGGAAGAGTCATGTTGCCACGCGAGTAATGGGGACCTTTGGATATGTGGCTCCTGAATATGCAAATAGTGGCCTTTTAAGTGAAAAGAGTGATGTATATAGCTTTGGCGTTGTACTATTGGAAGCAATTAGTGGAAGAGATCCAGTTGATCATGGCCGTCCAACACAGGAAGTTAATCTGGTTGATTGGCTGAAGATGATGGTTGGAAACAGACGATCAGAAGAAGTGGTGGATCCAAACATTGAGGTGAAGCCATCAACAAGAGCATTAAAACGAGTTCTCTTAACTGCTTTAAGATGTTTAGATCCAGATTCTGAGAAAAGACCCAAGATGGGCCAAGTTGTACGTATGCTTGAATCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGGCAGTGGAGAAATTCTGGGGGTAGTACAGAAACTGAATCCCAGAAGGCTTATTCTGACACAGAAAAGAGTGAGATTCAGTGTTCTAAATCAGAGACTGAAGGGTAA 1530 0.4131 MGGDLKTELSQKTSIFGIKVWEIIGIAIGFGIIVILCVISLCLTSRKKSRKTSNKIPVTQIPTISKEIKEVQLEAVSSNGFVPPSDGILVTIHDKSSGRESDKVMVHLGVGKTRHGDSSSHSDSFHKKSEKDGGGSQSGEERRYGSVKVYKPSSSYPITAPSPLCGLPEFSQLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGNPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEFVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLGAGKSHVATRVMGTFGYVAPEYANSGLLSEKSDVYSFGVVLLEAISGRDPVDHGRPTQEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRVLLTALRCLDPDSEKRPKMGQVVRMLESEEYPLPREDRRQWRNSGGSTETESQKAYSDTEKSEIQCSKSETEG 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0565 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Lal12g0565 509 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0565 509 MobiDBLite consensus disorder prediction 490 509 - -
Lal12g0565 509 ProSiteProfiles Protein kinase domain profile. 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0565 509 Pfam Protein kinase domain 192 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0565 509 PANTHER OS01G0323000 PROTEIN 3 506 - -
Lal12g0565 509 Gene3D Phosphorylase Kinase; domain 1 172 266 - -
Lal12g0565 509 MobiDBLite consensus disorder prediction 111 144 - -
Lal12g0565 509 MobiDBLite consensus disorder prediction 454 509 - -
Lal12g0565 509 MobiDBLite consensus disorder prediction 454 480 - -
Lal12g0565 509 CDD STKc_IRAK 197 463 - -
Lal12g0565 509 SUPERFAMILY Protein kinase-like (PK-like) 175 471 IPR011009 -
Lal12g0565 509 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Lal12g0565 509 Gene3D Transferase(Phosphotransferase) domain 1 267 476 - -
Lal12g0565 509 MobiDBLite consensus disorder prediction 111 138 - -
Lal12g0565 509 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0565 Lal-Chr12 4044710 4049466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0565 17 465 Trihelix Transcription Factor Family AT1G70460 40.659 7.13e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lal12g0565 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0565 - - jre:109008584 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0565 12 4044710 4049466 Lal12g0565 12 4044710 4049466 ECH
Lal12g0565 12 4044710 4049466 Lal3g1424 3 20150281 20158734 PCT