Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0562 ATGACACAAACAACTCCACCTATATCACACAACACAACCCTCTTTCAATCTTGTATGGGAGGAGGAGGAGGAGGAGGAGCAGCCATGTCGTACGCGGAGGCGCAATATACATCGGCGAAGACATCAGTGTGGTGGGATATAGAGAATTGTCAAGTTCCTAAAGATTGTGATCCTCATGCTATTGCTCAGAACATTAGTTCCGCTCTTGTTCATATGAAATATTGTGGTCCCGTTTCTATCTCCGCTTACGGCGACACCACTCGCATCACTTCCACCGTTCAACAAGCACTTTCCAGCACCGGTATCTCACTCAATCATGTCCCCGCCGGCGTTAAAGATGCTAGCGACAAGAAGATTCTTGTGGACATGCTGTTCTGGGCAGTGGACAATCCCGCACCTGCTAATTATTTATTAATTTCGGGGGACCGAGACTTCTCCAATGCTCTTCATCAATTGCGGATGAGGAGATATAATATCCTCCTTGCACAACCCCAGAAAGCATCAGCACCCCTAGTCGCAGCCGCAAAGAGCGTGTGGCTTTGGACTAGTCTCTTGGCTGGAAAACCTCCTCTCACTGATAGTGAATCACAACAATTTGGTAATAATAGCTTCCAATCATCTTCAGACACCTTACCAATTCCAGTATCCAATTCCGTTCAGATACCGCAACATGTGAACTCCTATCCAGATGTTAATACAGGAAATCCGAAATTTTCAAATACAGGAAGGGGCTTTGATTCTAGACAGCAGGGGAAAACAACTTGGAGAGGTCCAAGTAAACCAAATGGACCCAGAACCATGAATCCCGCTCCTGTTGGGCTTCAAGAAAGTCGTAGCAATGTGAACTCTTTTCGACCTGGCAACTATAACCCAAATATTCACTCAAGTGTATCTGCTCAAAATCTTATGCATGGCAATTCTGATAAATCATGGAGCAATAACAGTAATCAACAGGGCAATCATCAAAATCCACATTCACAGCCATTAAGATCTAACAGTTTTCCTTCGCAACCTCCTTTTGCTCCAACTACTTCATATTCTCAAAATCCCCCTTCGCAACCTCTTTTTCCAAATCCTCCTTCGCAACCTTATTTTGCTCCAACCACTTCATATTCTCCAAATCCCCAAAACTTTGCAACGTCAGTAGTGCCACCTAGGACAGGTGGACCCAGCTTCTCTGCACGACCGCTTACAAATGTGCTGGATATTGGCAATCTGAATATTTCTGCACATCCCAGTAGTTCTCATGATCTTCGCCCTGTTAAGCAATGGAGTGGAGAGTTGAAACAGAGTTCCAACAGTAGTGCCTCACATCCTGTAAGACCATTTGACAAACAAAATGGACATATGGTGCATAGCACACAACAGTCATACAACGGCTATCCACATCGTCCTGAATATCGTCCTAAATCATTGGCACCTATGGGTGACAAAAATGTTCCTGCTAATGGTGTATGGGGCTCTGAAGGATGCCCTAAACCTTCTGAATACGTACAAGGTCTTATAGGAGTAGTTCTACTTGCCTTGAATACACTAAAAACTGAAAAAATCATGCCAACTGAGTCAAATCTAGCAGACTGCATTCGTTATGGTGATCCCAAACACCGCAACACTGACGTTAAGAAGGCTCTAGAGCATGCTATTGAGCAGCAGATGGTAGTGAAGCAGAATTTAGGTGCTTTGCAGTTATATGTTGGTAAGAATGATAAAGTTTGGAAGTGTGTGAACCCTATAGGTGGTAATCCCAAACAGCATTCTCAAGAAATATGGGATGAGATTCAAAAATATCTATCAACTCCTTCTGGAAGATCAGCAATAATGGGTACTCAGTGCAAGTATGAAGCAGGTATTGTGATTAAGAATATGTGTTTAAAAGATCATGTCTTGGGTGATGTCCTACAGATTTTGAACATGGTGATCACCCATAAAAAATGGATTGTGCATCATCAATCGGGATGGCAGCCACTTAATGTTACTCTAGCTGAGATCTATTCTGATCCCGGGCCCATAGCTGGCCCATAA 2022 0.4357 MTQTTPPISHNTTLFQSCMGGGGGGGAAMSYAEAQYTSAKTSVWWDIENCQVPKDCDPHAIAQNISSALVHMKYCGPVSISAYGDTTRITSTVQQALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGKPPLTDSESQQFGNNSFQSSSDTLPIPVSNSVQIPQHVNSYPDVNTGNPKFSNTGRGFDSRQQGKTTWRGPSKPNGPRTMNPAPVGLQESRSNVNSFRPGNYNPNIHSSVSAQNLMHGNSDKSWSNNSNQQGNHQNPHSQPLRSNSFPSQPPFAPTTSYSQNPPSQPLFPNPPSQPYFAPTTSYSPNPQNFATSVVPPRTGGPSFSARPLTNVLDIGNLNISAHPSSSHDLRPVKQWSGELKQSSNSSASHPVRPFDKQNGHMVHSTQQSYNGYPHRPEYRPKSLAPMGDKNVPANGVWGSEGCPKPSEYVQGLIGVVLLALNTLKTEKIMPTESNLADCIRYGDPKHRNTDVKKALEHAIEQQMVVKQNLGALQLYVGKNDKVWKCVNPIGGNPKQHSQEIWDEIQKYLSTPSGRSAIMGTQCKYEAGIVIKNMCLKDHVLGDVLQILNMVITHKKWIVHHQSGWQPLNVTLAEIYSDPGPIAGP 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0562 673 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 19 361 - -
Lal12g0562 673 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 361 658 - -
Lal12g0562 673 MobiDBLite consensus disorder prediction 352 366 - -
Lal12g0562 673 MobiDBLite consensus disorder prediction 424 441 - -
Lal12g0562 673 Gene3D - 32 183 - -
Lal12g0562 673 CDD PIN_limkain_b1_N_like 40 164 - -
Lal12g0562 673 Pfam NYN domain 40 176 IPR021139 GO:0004540
Lal12g0562 673 MobiDBLite consensus disorder prediction 192 394 - -
Lal12g0562 673 MobiDBLite consensus disorder prediction 192 261 - -
Lal12g0562 673 MobiDBLite consensus disorder prediction 272 351 - -
Lal12g0562 673 MobiDBLite consensus disorder prediction 367 394 - -
Lal12g0562 673 MobiDBLite consensus disorder prediction 424 443 - -
Lal12g0562 673 PANTHER LIMKAIN B LKAP 19 361 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lal12g0562 673 PANTHER LIMKAIN B LKAP 361 658 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0562 Lal-Chr12 4024036 4028056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0562 29 262 C2H2 Transcription Factor Family AT5G61190 62.712 3.61e-83 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0562 - - lang:109346239 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0562 12 4024036 4028056 Lal12g0562 12 4024036 4028056 ECH
Lal12g0562 12 4024036 4028056 Lal13g0596 13 3883014 3886715 ECH