Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0557 ATGCCTCTTTATGAATTATACATGCTTTCTAGAGAGAAGCTTGATAAAGAGGTTAGCAACACACGTGCAGATGAACAATCTCAACCTTCCTTGCCTGAGGATGGTATCTTTGAGCTGGTTTGGGAAAATGGTCAGATTTCAACACAGAGTCAATCCAGAAAGAGTCCTTCTTCTGGCAGGAGTTTGCCATCTCATTGTGTACCGTCTCATAGTCCGAAGGGTCGAGATAAAGATGAAGGAGGATATGCTATGAATACAAGGATGGGAAAGTTTGGAGACTTTGATTCTGGATTGAATGAAATCTCAATGTCAGTCCCATCACATGAAGTAGATTTGAGTCAAGATGGAGACATGATGCATTGGTTGGATTACTCAATGGATGGATCTTTGCAACATGACTATAGTTCTGATTTCTTACATGAACTTTCCGGTGTCACAGAAAATGACCTGCCTAAATCAAATAATTTTGCCATTGTGGATAGAAGAAGCAACGGTACTAATCAGGTATTTAGGGACTCTTGTAAAAGTTCTGCAAGTTATGTTGCTGGTTTAGAACAAGGGAATGTTTCAAAGGGTTCTTCAACCGGAGAAGTTGTCACTCCTGGGTCTAAAGCTAGTACCAATCAGCTATACCCGCCATCATCACATCAATGTCAAACACCATTTACATCTGTTAGATCCAAAGTATCAGATATAACTGAGAACAATACAAATAATGCTACTCAGGATGCACCTCGTGGCGAAATAACTCAGATTGCATCTTCCTCTAGTGATTTTTGTAGCTTAAAGATGCAGAAGCAGGATCCAGTTATTCCTAGCAATGGTTCCACGGTGATGAATTTCTCCCATTTTGCAAGGCCTGCTGGTATTATGAGAACTAATCTTCAGAATGTTGGCTTGAAGTCTGATTTGTCTTCAGGAAGAGCAGACAGTCAGGGAAATAAGAATAAAGGTGCAGCTACGACTAGCAACTACCGTCCTGAATCAGTAAGAGTTGATTCAAGTAGCGATTGTTCAAAGGAACCAACCATGCATTGCCAGCAGGTTGTGGAGCAATCCAAGGTTGATTTGAAACGGTCAGAGCCAAAATCTCTTGAACAGGAGGCTGCTGTAGTTTCTAAACAGTTGGACCCTGTTTGCAAAGAGAGTTCTATTAAGGTTGATAAATCTTCCATTCAAATTCTTGCTGAAAGTGGCTCTAAAAAACAAACAGCTGTTGAAAAAAGTATGGAGCCAGTAGTAGCCTCCTCCTCTGTTTGTTCTGGCAATGGTGCAGACAGAGTTTCAGATGACCCAAATCAAAATTTGAAGCGAAAAAGTAGAGACACTGAGGGCTCTGAGAGCCATAGTGAAGATGCTGAGGAAGAATCTGTGGGTCTTAAAAAGGCGGTTGCTGGACAAAGAGGTACAGGTATTAAGAGAAGCCGTGCAGCTGAAGTGCATAATTTATCCGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAACAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCATCCAATGATGATACCTGCGGGAATGCAGCACATGCATGCACCACATATGGCTCCTTTTTCACCTATGGGTGTTGGCATGGGTATGGGTTATGGGATGGGTATGGGTTATGGGATGGGTATGCCTGACATGAATGGTGGTTCTTCTAGATTCCCAATGATTCACATGCCCCAAATGCAAGGAAATCATATACCTGTTGCACATGTGTCTGGACCCAACGCTTTACATGGGATGACAAGATCAAATCCTCAAGGTTTTGGGCTTCCAGTTCAGGGTCAGGGACTTCCCGTGCCAATACCAAGTACTCCTGTTTTTCCTTTTTCAGTAGGGCCTTTTATGAACTCACCAACTCCGGTACAACATGCCGGTGGAACAGTAACAGGACTTGCTGAAACTGGGAACTCAGCTTCTTGCTTGAAAGACCCAATGGCAAATGTGGACCAACAAGTTAAGCAAAGTAATGACTCAACAAGTCAGATGATGCCTCAACCTAACCAGTGTGAAGCAGCAACCATCGGATTTGAACAGTCAGCTTTGGTGCAAAATAGTGGTCATGCCTCTGATATTAATGACAGTGGAGCTGTTGATGCAAAGAAGATAGCCTCGTGA 2229 0.4258 MPLYELYMLSREKLDKEVSNTRADEQSQPSLPEDGIFELVWENGQISTQSQSRKSPSSGRSLPSHCVPSHSPKGRDKDEGGYAMNTRMGKFGDFDSGLNEISMSVPSHEVDLSQDGDMMHWLDYSMDGSLQHDYSSDFLHELSGVTENDLPKSNNFAIVDRRSNGTNQVFRDSCKSSASYVAGLEQGNVSKGSSTGEVVTPGSKASTNQLYPPSSHQCQTPFTSVRSKVSDITENNTNNATQDAPRGEITQIASSSSDFCSLKMQKQDPVIPSNGSTVMNFSHFARPAGIMRTNLQNVGLKSDLSSGRADSQGNKNKGAATTSNYRPESVRVDSSSDCSKEPTMHCQQVVEQSKVDLKRSEPKSLEQEAAVVSKQLDPVCKESSIKVDKSSIQILAESGSKKQTAVEKSMEPVVASSSVCSGNGADRVSDDPNQNLKRKSRDTEGSESHSEDAEEESVGLKKAVAGQRGTGIKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMHPMMIPAGMQHMHAPHMAPFSPMGVGMGMGYGMGMGYGMGMPDMNGGSSRFPMIHMPQMQGNHIPVAHVSGPNALHGMTRSNPQGFGLPVQGQGLPVPIPSTPVFPFSVGPFMNSPTPVQHAGGTVTGLAETGNSASCLKDPMANVDQQVKQSNDSTSQMMPQPNQCEAATIGFEQSALVQNSGHASDINDSGAVDAKKIAS 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0557 742 MobiDBLite consensus disorder prediction 722 742 - -
Lal12g0557 742 MobiDBLite consensus disorder prediction 397 491 - -
Lal12g0557 742 Pfam Helix-loop-helix DNA-binding domain 480 526 IPR011598 GO:0046983
Lal12g0557 742 SMART finulus 482 531 IPR011598 GO:0046983
Lal12g0557 742 MobiDBLite consensus disorder prediction 42 65 - -
Lal12g0557 742 MobiDBLite consensus disorder prediction 187 221 - -
Lal12g0557 742 MobiDBLite consensus disorder prediction 17 86 - -
Lal12g0557 742 PANTHER TRANSCRIPTION FACTOR PIF3 1 703 IPR044273 GO:0003700|GO:0006355
Lal12g0557 742 MobiDBLite consensus disorder prediction 397 430 - -
Lal12g0557 742 Gene3D - 472 534 IPR036638 GO:0046983
Lal12g0557 742 MobiDBLite consensus disorder prediction 474 491 - -
Lal12g0557 742 MobiDBLite consensus disorder prediction 301 345 - -
Lal12g0557 742 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 476 525 IPR011598 GO:0046983
Lal12g0557 742 MobiDBLite consensus disorder prediction 431 461 - -
Lal12g0557 742 PANTHER TRANSCRIPTION FACTOR PIF3 1 703 - -
Lal12g0557 742 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 474 536 IPR036638 GO:0046983
Lal12g0557 742 CDD bHLH_AtPIF_like 476 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0557 Lal-Chr12 3990242 3995950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0557 265 600 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 42.773 5.48e-56 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal12g0557 HLH 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0557 K12126 - gmx:100794974 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0557 12 3990242 3995950 Lal12g0557 12 3990242 3995950 ECH
Lal12g0557 12 3990242 3995950 Lal13g0585 13 3821116 3825645 LSH