Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0555 ATGGGAAGGCATTCTTGTTGCTATAAGCAGAAGCTGAGAAAAGGTCTTTGGTCTCCAGAGGAAGATGAGAAGCTTCTCAATTATATAACCAACCATGGTCTTGGATGTTGGAGTTCAGTTCCAAAACTAGCTGGTTTGTATAGGTGTGGAAAGAGTTGCAGGTTGAGGTGGATTAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTTTCACAGCAAGAAGAGAATTTAATAATTGAACTCCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACTGATAATGAGATCAAGAACCTATGGAACTCATGCATCAAGAAGAAACTTAGGCAAAGAGGCATTGACCCAAACACTCACAAACTAATCTCTGAGGTTGAGAATGACAAGGACAAGCCACCCATAGTAGACAAAAGCAATCACAAATTAGCCTCAGTGGGATCCAATGAAGTAAGTAGTTTTTTTGACCCATCAAAACCCAGCCAAACTTCCATTCCTTCAGAGAGATATAACCCTCTTGAAATCTCCACTAGTTCCAAGATCAACAACAACACTTGCAAAAGTAACTTAACCAGCACCACAGCCACACAAGAATTATTTCTAGACTCCATCATCAGTTGCAGACCATCTGATATGGTAGGAGGAGGATATTTCTCATTCCAAAACTTAAACTATGGACCAGACATGAATAACACCTCTATTTACATGCCAGACCTTAATTCTAGCATAACTTCAACTATGCTCAATAATTCTGTATCGACCTCAATTTTCCAAACTCCAATACATGTAAAGCCAACTGTTACACTCCACTCTTATAACAACTTCAACAACAATCCTTCTATATCCTCCGGTGACATTGATGGGAATAGTAACAGCACTATGCAGTTTCAAAACAACACAAACTTACTTGTAAACAATAGCACTATAACATGGGGGACAGAAGATTCTGTGAAGGCTGATAAAGATGCTCATGAACATTTACCATTACAAGAAGAGATAAAGTGGTGTGAATATCTTAACACCCCATTTCTTCTTGGAAACACTGTGCAGAATCAGACTTCTCAGCCTATCTACATTGATGTGGTTAAACCAGAAAATGGTTTCATAACAGAAGAGTCAAGTACTAGTTGGCAACAACATAACCAGCAGCACCAACAAGCTTTTCAACTTTCAGATATATATAATAAAGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTCTAG 1248 0.3934 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITNHGLGCWSSVPKLAGLYRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQRGIDPNTHKLISEVENDKDKPPIVDKSNHKLASVGSNEVSSFFDPSKPSQTSIPSERYNPLEISTSSKINNNTCKSNLTSTTATQELFLDSIISCRPSDMVGGGYFSFQNLNYGPDMNNTSIYMPDLNSSITSTMLNNSVSTSIFQTPIHVKPTVTLHSYNNFNNNPSISSGDIDGNSNSTMQFQNNTNLLVNNSTITWGTEDSVKADKDAHEHLPLQEEIKWCEYLNTPFLLGNTVQNQTSQPIYIDVVKPENGFITEESSTSWQQHNQQHQQAFQLSDIYNKDLQRFSVAFGQTL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0555 415 Gene3D - 11 67 - -
Lal12g0555 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal12g0555 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal12g0555 415 CDD SANT 17 61 IPR001005 -
Lal12g0555 415 MobiDBLite consensus disorder prediction 156 175 - -
Lal12g0555 415 SMART sant 66 114 IPR001005 -
Lal12g0555 415 SMART sant 13 63 IPR001005 -
Lal12g0555 415 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal12g0555 415 Gene3D - 68 139 - -
Lal12g0555 415 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal12g0555 415 PANTHER HOMEODOMAIN-RELATED 1 408 - -
Lal12g0555 415 PANTHER MYB DOMAIN PROTEIN 55 1 408 - -
Lal12g0555 415 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal12g0555 415 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lal12g0555 415 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lal12g0555 415 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0555 Lal-Chr12 3975096 3977088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0555 1 415 MYB Transcription Factor Family AT1G09540 49.526 2.15e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g0555 Myb_DNA-binding 9.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0555 12 3975096 3977088 Lal13g0583 13 3805334 3807497 ECH
Lal12g0547 12 3916110 3918394 Lal12g0555 12 3975096 3977088 ECH
Lal13g0566 13 3700200 3702576 Lal12g0555 12 3975096 3977088 ECH
Lal24g0462 24 3261604 3263584 Lal12g0555 12 3975096 3977088 ECH
Lal3g1419 3 20090912 20092796 Lal12g0555 12 3975096 3977088 ECH
Lal12g0555 12 3975096 3977088 Lal12g0555 12 3975096 3977088 ECH
Lal12g0555 12 3975096 3977088 Lal13g0583 13 3805334 3807497 LSH
Lal12g0555 12 3975096 3977088 Lal24g0462 24 3261604 3263584 LSH
Lal3g1419 3 20090912 20092796 Lal12g0555 12 3975096 3977088 PCT
Lal12g0555 12 3975096 3977088 Lal3g1419 3 20090912 20092796 PCT