Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0554 ATGGGTATTAAGGGTTTAACGAAGCTTTTGGCTGACAATGCTCCAAAATCAATGAAGGAGAATAAATTTGAGAGCTACTTTGGCCGAAAGATTGCCATTGACGCTAGCATGAGCATTTACCAGTTTCTTATTGTAGTGGGAAGAATTGGAACTGAGACGCTCACTAATGAGGCTGGTGAAGTTACAAGTCACTTGCAAGGGATGTTTTCCCGCACAATCAGACTTCTAGAAGCTGGGATCAAGCCAGTATATGTTTTTGATGGTAAGCCACCCGAATTGAAGAAGCAAGAGTTGGCAAAACGTTACTCAAAGAGGGCTGAGGCTACAGAGGGTTTGACAGAAGCCATAGAGGCTGACAATAAGGAAGACATTGAGAAATTCAGTAAACGGACAGTAAAGGTTACAAAGCAGCATAATGATGACTGCAAAAGACTTCTAAGACTCATGGGAGTGCCTGTTGTTGAGGCTTTGGCTTCCACAGGCACCCTCAGAAGCAGAGGCACAGTGTGCTGCACTCTGCAAAGCTGGAAAGGCAAGTTCATACCTGCTCTTGTGTTTGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGAGCTCCAAAATTTCTTCGCCACTTAATGGATCCTAGCTCGAAGAAAGTTCCAGTGATGGAATTTGAAATTGAAAAGATTTTGGAGGGGCTAAATATGACCATGGACCAATTTATTGACTTGTGCATTCTCTCTGGATGTGACTATTGTGAAAACATTCGAGGGATTGGAGGAATTTCTGCCTTGAAGCTCATACGTCAACATGGTTCTATCGAGAATATACTGGAGAACATAAATAAAGAGAGGTACCAGATAGCAGATGATTGGCCATATCAGGAGGCTCGGCGCCTTTTTAAAGAACCAACGGTCTTGATTGAAGAAGAGGAACTTAATCTTAAGTGGTCTGCTCCAGATGAAGAAGGGTTAATAACATTTCTGGTAAATGAGAATGGGTTCAACAATGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCAGCGAAGAACAAGTCATCACAGGGCCGTTTAGAATCATTTTTTAAGCCAACTGCAAATCCATCTGCACCTATCAAACGGAAGGAAAGCAAATGCATGCTTATATATTTCAAACCGGCAACTGAGCATAAGATGTTATCTCTGCAACTTTCTAACTGGTCAAGGCCCATGGTTTTACGCAACTTGAGCTTGCCAATATATAATCTGGGTTCCAACCTCTCTGTGCCATTGTCTAGAGTAATATTGATAGTGGTTGTCCCAATTTCGCTATTGCCTATTGATGTGCCAAGCCCTGCTTCCATATGGTGGTGGGGGAAACACCAGAGAATAATGCTAAAGAGACTAGCAAAAACAAAAAGACCAAGGGCAGTGGTGGTAGGAAGAAGAAATAGTTGGCTTTATATCTTAAAAAAATATTGGCAGAACCATTTGCTTGTTCATCAGTTAGCACAAAGGAGCATTGATTCACAATACCAGTGTGCAGTCCACCAAATTGTAAAATGTTTGCGTGATTGTGAAGACAATTTGTGGAATTTGACTAATTTAAGCTAA 1587 0.4127 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRIGTETLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPELKKQELAKRYSKRAEATEGLTEAIEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEALASTGTLRSRGTVCCTLQSWKGKFIPALVFVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEIEKILEGLNMTMDQFIDLCILSGCDYCENIRGIGGISALKLIRQHGSIENILENINKERYQIADDWPYQEARRLFKEPTVLIEEEELNLKWSAPDEEGLITFLVNENGFNNDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSAPIKRKESKCMLIYFKPATEHKMLSLQLSNWSRPMVLRNLSLPIYNLGSNLSVPLSRVILIVVVPISLLPIDVPSPASIWWWGKHQRIMLKRLAKTKRPRAVVVGRRNSWLYILKKYWQNHLLVHQLAQRSIDSQYQCAVHQIVKCLRDCEDNLWNLTNLS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0554 528 SMART xpgineu 147 233 IPR006086 GO:0004518
Lal12g0554 528 SUPERFAMILY PIN domain-like 2 248 IPR029060 -
Lal12g0554 528 SMART HhH_4 235 268 IPR008918 GO:0003677|GO:0003824
Lal12g0554 528 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Lal12g0554 528 Gene3D - 233 300 - -
Lal12g0554 528 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lal12g0554 528 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lal12g0554 528 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 181 201 IPR006084 -
Lal12g0554 528 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 238 253 IPR006084 -
Lal12g0554 528 CDD PIN_FEN1 4 346 - -
Lal12g0554 528 PANTHER FLAP ENDONUCLEASE 1 1 394 - -
Lal12g0554 528 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 233 367 IPR036279 -
Lal12g0554 528 SMART xpgn3 1 108 IPR006085 GO:0004518
Lal12g0554 528 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 394 IPR006084 -
Lal12g0554 528 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Lal12g0554 528 CDD H3TH_FEN1-Euk 236 304 - -
Lal12g0554 528 Hamap Flap endonuclease 1 [fen]. 1 361 IPR023426 GO:0016788
Lal12g0554 528 Gene3D - 2 232 - -
Lal12g0554 528 Pfam XPG I-region 187 248 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0554 Lal-Chr12 3966438 3972408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0554 1 423 Core DNA Replication Machinery Family AT5G26680 73.759 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0554 K04799 - zju:107411672 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0554 12 3966438 3972408 Lal12g0554 12 3966438 3972408 ECH
Lal12g0554 12 3966438 3972408 Lal13g0580 13 3777906 3781645 LSH