Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0547 ATGGGAAGATACTCTTGCTGTTACAAACAGAAGCTTAGGAAGGGTCTATGGTCTCCTGAGGAGGATGTAAAACTTATAAACCATATTACTAAGCATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCTGGTTTGCAAAGATGTGGCAAGAGTTGTAGGCTAAGGTGGTTAAACTACTTAAGGCCTGATTTAAAGAGAGGTACATTCTCACAAGAAGAAGAAAATCTTATCATTGAACTTCATGCAGTATTAGGGAACAGATGGTCTCAGATTGCGGCTCAATTACCGGGGAGGACTGATAATGAAATAAAGAATCTGTGGAACTCTTGCCTGAAGAAGAGACTGAGGCAAAATGGTATTGATCCTGTTACACATAAACCACTATCTGAGGTTGAGAATGGAGAGGAGAATAGTAGGAGCCTAGATAAAGCACCAGAAGTTTCCAATGAATTAAACCTCCTGAAATCAGAAAGCTCAAAATCAGATGCAGCTTCATATGAGCAAAGAACATCTTCAATCTCTCCAAAAGCCTATGCAACTGAGATGGAAGGTTCTCCTCATAGCTCCAAGTTTTACTTCAAAAGTGATACCAATATGATAAACAATAATTGCAGCAAGGACTTGTTCCAAGACAGGTTTATGACCAATTGTCACTCCTCTGATTTGATGGGGAATTTTTCACATCAAATAAGTTATGCATCCACTGACTATATCCCAAATGATTCAAACTCTACTCATTGGTTCAGCCAAACTTCAAGGCCTTTTGATATAAACTCTGAATATCCATTCAATGCCACTTCCATTCTTACACCTACAACAAGCATGTTTCTTCCTATTTCCTTTAACTACAACCCTGCACTTGTTGTTTCCTCTGGTAATATTTCTACACCTTATGGATCCCATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATAGCAGCAATGGGAGTAATAGCAGCACAGAGTTAAGTAGCAGTCCTTTAAATATACACAATAGCACCTTTTCTTCTTGGGGAATGGGAGATTGTAGCACCCCTAATAAAGAGGCACAAGTTCATATGTTGGAGAATCAGACAGAAGAAGCAAAGTGGAATGAGTACCTTCATAACCCAATGTCAATGTTGGCTTCTATGCAAAATCAATATCAACCTCCTGAAACTTTATGCAATGAGATAAAGCCCACCATGAATTTTATGCATGAAACGTTAGGGTCTATATTACCTCATAGTCATACAAAGCAGCAAGAACTCTCACAAAGTTTTAGTATCTTTTCCAAGGACATTCAGAAGCTTACATCAGCCTTTGGACAAATGTAG 1320 0.3924 MGRYSCCYKQKLRKGLWSPEEDVKLINHITKHGHGCWSSVPKQAGLQRCGKSCRLRWLNYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQNGIDPVTHKPLSEVENGEENSRSLDKAPEVSNELNLLKSESSKSDAASYEQRTSSISPKAYATEMEGSPHSSKFYFKSDTNMINNNCSKDLFQDRFMTNCHSSDLMGNFSHQISYASTDYIPNDSNSTHWFSQTSRPFDINSEYPFNATSILTPTTSMFLPISFNYNPALVVSSGNISTPYGSHYWEASASNNSNSSNGSNSSTELSSSPLNIHNSTFSSWGMGDCSTPNKEAQVHMLENQTEEAKWNEYLHNPMSMLASMQNQYQPPETLCNEIKPTMNFMHETLGSILPHSHTKQQELSQSFSIFSKDIQKLTSAFGQM 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0547 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal12g0547 439 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal12g0547 439 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal12g0547 439 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal12g0547 439 CDD SANT 17 61 IPR001005 -
Lal12g0547 439 MobiDBLite consensus disorder prediction 129 144 - -
Lal12g0547 439 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal12g0547 439 MobiDBLite consensus disorder prediction 122 148 - -
Lal12g0547 439 PANTHER MYB DOMAIN PROTEIN 55 1 433 - -
Lal12g0547 439 PANTHER HOMEODOMAIN-RELATED 1 433 - -
Lal12g0547 439 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lal12g0547 439 SMART sant 66 114 IPR001005 -
Lal12g0547 439 SMART sant 13 63 IPR001005 -
Lal12g0547 439 CDD SANT 69 109 IPR001005 -
Lal12g0547 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal12g0547 439 Gene3D - 69 141 - -
Lal12g0547 439 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0547 Lal-Chr12 3916110 3918394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0547 1 138 MYB Transcription Factor Family AT4G01680 86.232 3.03e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g0547 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0547 K09422 - gmx:100815881 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0547 12 3916110 3918394 Lal12g0555 12 3975096 3977088 ECH
Lal12g0547 12 3916110 3918394 Lal13g0583 13 3805334 3807497 ECH
Lal12g0547 12 3916110 3918394 Lal24g0462 24 3261604 3263584 ECH
Lal12g0547 12 3916110 3918394 Lal3g1419 3 20090912 20092796 ECH
Lal12g0547 12 3916110 3918394 Lal12g0547 12 3916110 3918394 ECH
Lal12g0547 12 3916110 3918394 Lal13g0566 13 3700200 3702576 LSH
Lal3g1411 3 20033858 20035866 Lal12g0547 12 3916110 3918394 PCT
Lal12g0547 12 3916110 3918394 Lal3g1411 3 20033858 20035866 PCT