Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0546 ATGGCTTCAGAGAATGGCCTTCATGAGGCCACAACAACAAATATTCCTCTTCCTGCAGACACAAATGCTGAAGAGAGCAAACAAACAGAGAAACAAAAAGAGAAACTTGAGACTGTTCCATTTCACAAGCTATTTTCTTTTGCAGACTCAACTGATATTCTTTTGATAACAGTTGGAACCATTGGTGCCATTGGAAATGGTTTAGGTTTGCCTCTCATGACATTATTGTTCGGTCAAATGATCGATACCTTCGGAAGTAACCAGACAACAGAACATATAGTAAAAGAAGTTTCCAAGGTCTCTCTGAAATTTGTGTACTTGGCTGTAGGATGTGGTTTGGCAGCATTCCTCCGTAAGTATTGCAATTATTCAGTTTATGAACGGACAAAGGTGTCTTGTTGGATGGTGACAGGAGAGAGACAAGCTGCAAGAATAAGGGGATTGTATTTGAAAACTATACTAAGACAAGATGTTGCTTTCTTTGATAAGGAAACAAACACTGGAGAGGTCATAGGAAGAATGTCTGGTGACACTGTTCTCATCCAAGATGCAATGGGAGAGAAGGTTGGCAAATTTCTGCAGCTAATTGCAACATTCATTGGAGGCTTTGTGGTTGCATTTGTCAAAGGCTGGCTTCTTACTCTAGTTATGATGTCAACTCTTCCACTTCTTGTTTTCTCCGGCGCCACCATGGCCATCATCATAGGTAGAATGGCTTCTAGAGGTCAAACTGCGTATGCAAAAGCTTCACATGTAGTTGAACAGACAATTGGCTCAATAAGAACTGTTGCATCCTTCACTGGTGAAAAACAAGCAGTATCTAGTTATAGCAAATTTCTCGTGGATGCTTACATATCGGGCGTTCATGAAGGATCCATTGCTGGAGCAGGACTAGGCACAGTTATGTTTGTTATTTTCTGTGGTTATGCTTTAGCTGTATGGTTTGGTGCAAAGATGATAATGGAAAAAGGATATAATGGAGGCATAGTGATCAATGTGATTATTGCTGTGTTAACAGCATCAATGTCTCTAGGCCAGGCATCACCTAGCATGAGTGCTTTTGCTGCGGGTCAGGCTGCAGCTTTCAAAATGTTTCAAACAATTGAGAGGAAACCAGAGATAGATGCTTATGACCCAAATGGAAAAACAGTAGAGGATATTCAGGGTGAAATAGAATTGAGGGAAGTTTATTTCTGTTATCCGGCGAGGCCCGATGAGCTGATATTCAATGGATTCTCTCTTCATATACATAGTGGTACAACTGCAGCTTTAGTTGGACAAAGTGGAAGTGGAAAATCTACAGTGATTAGCTTAGTTGAAAGATTCTATGATCCACAGAAAGGTGAAGTTCTTATTGATGGCATTAACTTGAAAGAATTTCAGCTTAGGTGGATCAGAGGAAAAATTGGCCTTGTTAGCCAGGAGCCGGTGTTGTTTGCATGTAGCATTAAGGATAACATTGCATATGGAAAGGAAGGAGCAAAAATTGAAGAGATAAGAATAGCAACTGAACTTGCCAATGCTGCTAATTTCATTGATAAATTACCACAGGGATTGGATACAATGGTTGGTGAGCATGGAACTCAGCTATCTGGTGGACAAAAGCAGCGAATTGCCATTGCAAGAGCAATCCTTAAAAATCCAAGGATTCTACTTCTAGATGAAGCTACAAGTGCACTTGATGCGGAGTCTGAAAGGATGGTGCAAGACGCGCTAGACAGGATCATGGTTAATCGTACCACTATTATTGTGGCACATCGCTTAAGCACGGTGAGAAATGCTGACATGATTGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGTACACACTCAGAACTACTGGGGGATCCAGAGGGAGCTTACTCTCAACTCATACGCTTACAAGAAGTAAACAATGAAACAGAAGAAACTGCAGATCATCGAAATAAGAGTGAACTTTCAGCGGAATCCTTTAGACAATCAAGTCAAAAGAGGTCACTTGGAAGATCCATTAGTCGAGGATCATCTGCAGGGAATAGCAGCCACCACTCATTTTCAGTTTCATTTGGTTTACCTACAGGAGTTAATGCCGCTGATACTGAACCTGAAAGCTCACAAGCCGAAGAAAAATCACCAGAGGTTCCTCTCTCGCGCCTTGCTTCTCTCAACAAGCCAGAGATTCCAGTGCTTCTGATAGGATGTGCAGCTGCAGTAGCAAATGGTGTTATACTTCCAATATTTGGCTTGTTGATTTCCAGTGTCATCAAAACATTTTATGAACCATTTGATGAGTTGAAAAAGGACTCAAAATTTTGGTCAATAATGTTTATGATTCTTGGTCTTGCATCCTTAGTGATAATACCAGCACGAGCTTACTTTTTCTCTGTGGCTGGATGCAAGTTGATCCAACGTATCAGACATATATGTTTTGAGAAGGTAGTGAACATGGAGGTTGGTTGGTTCGATGAGTCTGAGAACTCAAGTGGCGCAATTGGTGCAAGGCTTTCAGCAGATGCTGCATCTGTGCGCGCCCTTGTTGGCGATGCCCTGGGACTATTAATTGGAAATTTAGCAACTGCATTAGCAGGTTTGGTTATTGCTTTCACTGCGAGCTGGGAACTGGCGTTGATAATCCTTGTCTTGATTCCCCTAATTGGACTAAATGGATATGTTCAAATGAAATTCATGAAAGGATTCAGTGCTGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCCGTCGGAAGCATCAGAACAGTAGCTTCTTTCTGCTCTGAAGATAAGGTTATGGAACTATACAGGAAGAAATGTGAAGGCCCTATGAAAACCGGAATACGACAAGGATTGATTAGTGGATCAGGGTTTGGAGCTTCATTTTTCTTACTGTTTTGTGTCTATGCAACCAGTTTCTATGCTGGAGCTAGACTTGTGGAGGCGGGGAGGACAAAGTTCTCAGATGTTTTCTTTGCACTAACTATGGCAGCTATTGGCGTTTCCCAATCAAGCTCTTTTTCTCCTGACTCTAGCAAAGCCAAGTCAGCCACTGCATCCATATTTGGAATAATTGATAAGAAGTCAAAGATAGATCCTAGTGATGAGTCTGGTTCTACATTGGATAGTGTCAAAGGAGAAATTGAACTGCGCCATATAAGCTTCAAGTATCCATCTAGGCCAAATATCCAACTTTTTAGAGACCTCAACTTAACTATCCATTCTGGCAAGACAGTCGCGCTCGTTGGCGAAAGTGGAAGTGGAAAATCCACAGTAATTGCCTTATTACAAAGATTCTATGATCCTAACTCAGGAGAAATCACACTTGATGGGATAGAAATCCGGCGGTTACAACTCAAGTGGTTAAGGCAGCAAATGGGACTTGTAAGCCAAGAGCCAGTGTTGTTCAATGAAACTATTCATGCCAATATTGCATATGGAAAGGGAGGCAATGCAACTGAAGCCGAAATCATAGCTGCAGCAGAAATGGCCAATGCACATAGATTCATCAGTGGCTTACAACAGGGTTATGATACTATTGTGGGAGAGAGGGGAACTCAATTATCAGGTGGACAGAAGCAACGAGTTGCGATTGCGCGCGCTATAATTAAAAGTCCAAAAATATTGCTACTAGATGAGGCCACAAGTGCATTAGATGCAGAGTCAGAGAGGGTTGTTCAAGATGCATTAGACAAAGTCATGGTGAATAGGACCACAGTGGTTGTGGCTCATCGCTTATCTACAATAAAAAATGCAGATGTTATTGCTGTGGTGAAAAATGGAGTTATTGTTGAAAAGGGAAGACATGAAACACTCATTAACATCCATGATGGATTTTATGCTTCTTTAGTCCAACTTCACACTAGTGCTGCAACTGTGTGA 3867 0.4145 MASENGLHEATTTNIPLPADTNAEESKQTEKQKEKLETVPFHKLFSFADSTDILLITVGTIGAIGNGLGLPLMTLLFGQMIDTFGSNQTTEHIVKEVSKVSLKFVYLAVGCGLAAFLRKYCNYSVYERTKVSCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVVAFVKGWLLTLVMMSTLPLLVFSGATMAIIIGRMASRGQTAYAKASHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYISGVHEGSIAGAGLGTVMFVIFCGYALAVWFGAKMIMEKGYNGGIVINVIIAVLTASMSLGQASPSMSAFAAGQAAAFKMFQTIERKPEIDAYDPNGKTVEDIQGEIELREVYFCYPARPDELIFNGFSLHIHSGTTAALVGQSGSGKSTVISLVERFYDPQKGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFACSIKDNIAYGKEGAKIEEIRIATELANAANFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERMVQDALDRIMVNRTTIIVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLGDPEGAYSQLIRLQEVNNETEETADHRNKSELSAESFRQSSQKRSLGRSISRGSSAGNSSHHSFSVSFGLPTGVNAADTEPESSQAEEKSPEVPLSRLASLNKPEIPVLLIGCAAAVANGVILPIFGLLISSVIKTFYEPFDELKKDSKFWSIMFMILGLASLVIIPARAYFFSVAGCKLIQRIRHICFEKVVNMEVGWFDESENSSGAIGARLSADAASVRALVGDALGLLIGNLATALAGLVIAFTASWELALIILVLIPLIGLNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCSEDKVMELYRKKCEGPMKTGIRQGLISGSGFGASFFLLFCVYATSFYAGARLVEAGRTKFSDVFFALTMAAIGVSQSSSFSPDSSKAKSATASIFGIIDKKSKIDPSDESGSTLDSVKGEIELRHISFKYPSRPNIQLFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPNSGEITLDGIEIRRLQLKWLRQQMGLVSQEPVLFNETIHANIAYGKGGNATEAEIIAAAEMANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIHDGFYASLVQLHTSAATV 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0546 1288 MobiDBLite consensus disorder prediction 1 33 - -
Lal12g0546 1288 CDD ABC_MTABC3_MDL1_MDL2 1043 1281 - -
Lal12g0546 1288 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 58 356 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0546 1288 MobiDBLite consensus disorder prediction 1 23 - -
Lal12g0546 1288 MobiDBLite consensus disorder prediction 649 678 - -
Lal12g0546 1288 Gene3D - 1033 1287 IPR027417 -
Lal12g0546 1288 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 391 627 IPR003439 GO:0005524
Lal12g0546 1288 SUPERFAMILY ABC transporter transmembrane region 712 1027 IPR036640 GO:0005524|GO:0016021
Lal12g0546 1288 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1043 1280 IPR003439 GO:0005524
Lal12g0546 1288 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 28 1284 - -
Lal12g0546 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 629 IPR027417 -
Lal12g0546 1288 Gene3D - 389 646 IPR027417 -
Lal12g0546 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1034 1281 IPR027417 -
Lal12g0546 1288 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 352 - -
Lal12g0546 1288 ProSitePatterns ABC transporters family signature. 530 544 IPR017871 GO:0005524
Lal12g0546 1288 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 725 1011 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0546 1288 SUPERFAMILY ABC transporter transmembrane region 42 375 IPR036640 GO:0005524|GO:0016021
Lal12g0546 1288 PANTHER - 28 1284 - -
Lal12g0546 1288 SMART AAA_5 418 604 IPR003593 -
Lal12g0546 1288 SMART AAA_5 1070 1263 IPR003593 -
Lal12g0546 1288 Pfam ABC transporter transmembrane region 724 993 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0546 1288 Pfam ABC transporter transmembrane region 57 342 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0546 1288 Gene3D ABC transporter type 1, transmembrane domain 125 1017 IPR036640 GO:0005524|GO:0016021
Lal12g0546 1288 MobiDBLite consensus disorder prediction 634 678 - -
Lal12g0546 1288 Pfam ABC transporter 1062 1211 IPR003439 GO:0005524
Lal12g0546 1288 Pfam ABC transporter 410 558 IPR003439 GO:0005524
Lal12g0546 1288 ProSitePatterns ABC transporters family signature. 1183 1197 IPR017871 GO:0005524
Lal12g0546 1288 MobiDBLite consensus disorder prediction 690 709 - -
Lal12g0546 1288 MobiDBLite consensus disorder prediction 634 648 - -
Lal12g0546 1288 CDD ABC_MTABC3_MDL1_MDL2 391 629 - -
Lal12g0546 1288 CDD ABC_6TM_Pgp_ABCB1_D2_like 714 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0546 Lal-Chr12 3900480 3906265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0546 16 1282 Calmodulin-binding Proteins AT2G36910 44.262 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0546 K05658 - gmx:100800034 2083.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0546 12 3900480 3906265 Lal12g0546 12 3900480 3906265 ECH
Lal12g0546 12 3900480 3906265 Lal13g0556 13 3626088 3632591 LSH