Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0545 ATGAAAGGAAAGATAATTGTCTCTGCTGTTTCTCTCATCCTTGTGGTAGGTGTGGTGATAGGTGCAGTTGTTATCAACCACAACAACAGCACCACAAACACTGATGTTAAAGCTAATGTGAAGGCCGCTGATAAGATTTGTCAAAGTGCAGAGCAAAAAGACCTTTGTGTTCAAACCCTAGGCACCGTGAAGGAAACCTCAGACCCTAAAGAATATGTAGCAGCGGTTTTGAAAGCAAGCACAGAGAGTGTCATCAAGGCCTTCAACATGAGCGACAGGCTCATAGTGGAACATGGAAACAAGGGCCAAGGTGTCAAGATGGCCCTTGATGATTGCAAGGACTTGTTAGAATCTGCATTAGACAGTCTTCAGCTCTCAACGGACATGGTTGGTGGAAATAACGTTAAACAAGTGCATGACCAAACCGCTGACTTCAGGAATTGGTTAACTGCTGTTATCTCATACCAACAAGCTTGTTTGGAAGGGTTTGATGACGGTAACGAGGGTGAGAAAGCAGTGAAGGAACTATTCAAGAATGATAGTTTGGACCATATTGGTAAAATCACCGGTGTTGCACTTGACCTTGTGGCTGATTTGTCAAACATCCTTCAACACTTCGGCTTGCAGTTGGATTTGAAACCTTCCTCTCGCCGCCTTCTCGGTGCAGAGGAGACCGACGAAGAAGGACTCCCCACGTGGTTGTCCGCCTCCGACCGCAAGCTCTTGGGTAAGGTAGGCAAGAACAAAGGTGGCAGAAAGAAGGGTGGTAAGGGTAAAGGTAAGGGTGGTAAGGTTGCTGGCGGAGCTGCTGCTGGAGCTGCTGCCGGTGCCGGAGCTGCTAACGCTGCTGGCGCTGCAGGACCAGGTGCTAGAACCGTGGTGGTAGCCAAGGATGGTAGTGGCCAATTTAGAACCGTTAAGGAAGCTATTGACGCTTACCCTAAGGACTTGCAAGGAAGATATGTTATCCATGTTAAGGCTGGGGTCTATGATGAGTACATAACTGTTCCCAAGTTTGCAGCAAATATTCTTATGTATGGTGATGGCCCTTTGAACACCATTATCACCGGTAGAAAGAACTTTGCTCTTGCTGGTATCAAAACCATGATGACTGCCACATTCGCCAATACTGCACCTGGATTCATTGCCAAAGGAATTAAATTCGAGAACACTGCTGGTGTAGAAGGACACCAAGCTGTAGCACTCAGAAACCAAGGAGATATGTCAGCATTCTTTGATTGCCACATAGTGGGTTATCAAGATAGTTTGTATGTCCAAACGAATCGTCAATTCTACCGTAACTGTGAGATCTCTGGCACCATCGACTTCATCTTTGGAACATCAGCTACCTTGATTCAAAACTCAAGAATCATAGTAAGAAAGCCAAAAGCAAATCAATTCAACACAATCACTGCCGATGGCACAGAACACAGGACCATGAATTCAGGAATTGTGCTCCAGGGTTGTGATATTGTAGCAGAAGCTGGTCTTGTCCCAGCACAAAACCCATCCTACTTTGGTAGACCATGGAAGGCTTATTCAACTGCAGTAGTTATGGAATCAAATATTGATGGGTGTATTCACCCAGAGGGATGGAAAGAATGGGAAGGTGCACCAGGAGGGTTCACAGGAACCCTTTACTTTGTTGAATATGCCAACAGTGGACCTGGTTCAAACGTTGCTGGAAGAGTAAAGTGGAACACTTTGCATACAAGAGTTAGTCCTCAAGAAGCTGCTAAATACACTGCAGGACAATTTCTTGCAGCTGGACCTGCTAGCAAAGCTGAAGATTGGTTGAAAGCTGCTGGTGTTCCTTTTACCCTTGGATTTTCCAAGTGA 1839 0.4579 MKGKIIVSAVSLILVVGVVIGAVVINHNNSTTNTDVKANVKAADKICQSAEQKDLCVQTLGTVKETSDPKEYVAAVLKASTESVIKAFNMSDRLIVEHGNKGQGVKMALDDCKDLLESALDSLQLSTDMVGGNNVKQVHDQTADFRNWLTAVISYQQACLEGFDDGNEGEKAVKELFKNDSLDHIGKITGVALDLVADLSNILQHFGLQLDLKPSSRRLLGAEETDEEGLPTWLSASDRKLLGKVGKNKGGRKKGGKGKGKGGKVAGGAAAGAAAGAGAANAAGAAGPGARTVVVAKDGSGQFRTVKEAIDAYPKDLQGRYVIHVKAGVYDEYITVPKFAANILMYGDGPLNTIITGRKNFALAGIKTMMTATFANTAPGFIAKGIKFENTAGVEGHQAVALRNQGDMSAFFDCHIVGYQDSLYVQTNRQFYRNCEISGTIDFIFGTSATLIQNSRIIVRKPKANQFNTITADGTEHRTMNSGIVLQGCDIVAEAGLVPAQNPSYFGRPWKAYSTAVVMESNIDGCIHPEGWKEWEGAPGGFTGTLYFVEYANSGPGSNVAGRVKWNTLHTRVSPQEAAKYTAGQFLAAGPASKAEDWLKAAGVPFTLGFSK 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0545 612 SUPERFAMILY Pectin lyase-like 290 608 IPR011050 -
Lal12g0545 612 Pfam Plant invertase/pectin methylesterase inhibitor 44 193 IPR006501 GO:0004857
Lal12g0545 612 Gene3D - 289 610 IPR012334 -
Lal12g0545 612 MobiDBLite consensus disorder prediction 246 260 - -
Lal12g0545 612 CDD PMEI-like_3 46 201 - -
Lal12g0545 612 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 196 IPR035513 -
Lal12g0545 612 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 181 IPR006501 GO:0004857
Lal12g0545 612 PANTHER PECTINESTERASE 3 246 - -
Lal12g0545 612 PANTHER PECTINESTERASE 283 610 - -
Lal12g0545 612 SMART PMEI_2 38 195 IPR006501 GO:0004857
Lal12g0545 612 MobiDBLite consensus disorder prediction 244 263 - -
Lal12g0545 612 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Lal12g0545 612 Pfam Pectinesterase 293 588 IPR000070 GO:0030599|GO:0042545
Lal12g0545 612 ProSitePatterns Pectinesterase signature 2. 437 446 IPR033131 -
Lal12g0545 612 PANTHER PECTINESTERASE 3 246 - -
Lal12g0545 612 PANTHER PECTINESTERASE 283 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0545 Lal-Chr12 3895575 3897775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0545 1 610 Carbohydrate Esterase AT2G47040 36.447 1.54e-124 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0545 K01051 - gmx:100775246 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0545 12 3895575 3897775 Lal13g0553 13 3597638 3600108 LSH
Lal12g0545 12 3895575 3897775 Lal5g0211 5 1823934 1826219 PCT