Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0544 ATGTTGAAAGGGAAAGTTCTTATATCTGGTGTTTCCATCATCCTAGTGGTGGGTGTTGTAATTGGAGTTGTAGTTGTTGTGAAGAATAACAATGGCCCTGCTGAAAATCCTGAAGTTCAAGCTCATCAAAAACAGGTGAAGACAATTTGCAAGGATACTGAAGACCCTAAACTATGCTATGACACTCTCAATAAAGTGAAACCTGCCAATGGCACTGATCCAAAGGCTTACATAGCAGCCTCGGTGCAATCGATCGCCGAGAGTGTTATAAAGTCTGTGAACATGAGTGACAGGCTCTTCGTGGAGCATGGTAAAGATGACAAAAAAGGGTTAAAAATGGCTCTTGAAGATTGCAAGGATTTAATGGAATTCGCCATGGATAGCATAGAGGCTTCTATTAACATGGTGCAAAACAATAACATCCAAGCAGTGCATGATCAAACACCAGACTTCAGGAATTGGTTGAGTGCTGTTATCTCATATCAAGAGTCATGCATGGATGGATTTGAAGATGGGAAAGACGGTGAAGAAAAAGTTAAGGAACAAATGCACTCAGAAAGTTTGGACGTAATGGGAAGGCTAACTGGGATAGCCCTTGATATTGTTTCTGATATGACCAAGATTCTTCAGGAATTTGATTTGAAGTTGGATTTAAAACCGGCTTCGCGACGCCTTTTGGCCGAGGATATTGATGATGAAGGATTTCCTACTTGGTTTTCAGCCACAGATCGCCATCTCTTAGCTAAGGGAAAAGGGGGAAAAGGGGGACAAGGTCCCAAGCCAAATGTTGTAGTGGCAAAAGATGGGACTGGTCAATTTAAGACCATTAAGGAAGCTATTGATTCTTACCCTAAGGACTTGAAGGGTAGATATATTATTTATGTTAAGGCTGGTGTGTATGATGAGTATATCCTTGTTCCTAAGAAATCGGCAAATATTCTCATGTATGGTGATGGCCCTGCAAAGACCATTGTCACTGGTCGCAAATGCTTTAGAGATGGTATCAAGACAATGAACACTGCCACCTTTGCCAACACTGCACCAGGATTCATTGCTAAATCAATGGCATTCGAGAACACAGCTGGTGCTGAAGGTCACCAAGCAGTGGCACTCAGAAACCAAGGAGACATGTCAGCGTTCTTCGATTGCGCCATGCATGGTTACCAGGATACACTATACGTCCAAACAAATCGCCAATTCTACCGCAACTGTGAAATCTCAGGCACCATAGACTTCATCTTTGGCTCCTCAGCCACCTTGATCCAAAGCTCCAGAATCATAGTTCGAAAACCAGGGCCTGATCAATTCAATACAGTGACTGCAGATGGAACAAAACAAAGGAACATGGCAACAGGGATTGTTATCCAAAACTGTGAAATAGTCCCAGAACAAGCACTCTTCCCTGTAAGGTTTGATTTCAAATCTTACTTAGGAAGACCATGGAAAGATTATGCAAGAACAGTTATTATGGAATCAAACATAGGTGACTTTCTTAATCCAGAAGGGTGGACCCCATGGAGTGGAACCATATTCCTTGACACATTGTATTATGCTGAGTATGCAAACACTGGACCTGGTTCAAATCTTTCAGGAAGGGTCAAATGGAAGGGTTACCATCCAAACATTCCTAGGGATGAAGCTGCTCGATTCACTGCTGGACAGTTCCTTAGAGGTGGAGCATCTGGAAGAGCTGAAGATTGGTTAGATGCTAGTGGCATTCCTTATGCTGTTGGCTTCACCAAGTAA 1746 0.4267 MLKGKVLISGVSIILVVGVVIGVVVVVKNNNGPAENPEVQAHQKQVKTICKDTEDPKLCYDTLNKVKPANGTDPKAYIAASVQSIAESVIKSVNMSDRLFVEHGKDDKKGLKMALEDCKDLMEFAMDSIEASINMVQNNNIQAVHDQTPDFRNWLSAVISYQESCMDGFEDGKDGEEKVKEQMHSESLDVMGRLTGIALDIVSDMTKILQEFDLKLDLKPASRRLLAEDIDDEGFPTWFSATDRHLLAKGKGGKGGQGPKPNVVVAKDGTGQFKTIKEAIDSYPKDLKGRYIIYVKAGVYDEYILVPKKSANILMYGDGPAKTIVTGRKCFRDGIKTMNTATFANTAPGFIAKSMAFENTAGAEGHQAVALRNQGDMSAFFDCAMHGYQDTLYVQTNRQFYRNCEISGTIDFIFGSSATLIQSSRIIVRKPGPDQFNTVTADGTKQRNMATGIVIQNCEIVPEQALFPVRFDFKSYLGRPWKDYARTVIMESNIGDFLNPEGWTPWSGTIFLDTLYYAEYANTGPGSNLSGRVKWKGYHPNIPRDEAARFTAGQFLRGGASGRAEDWLDASGIPYAVGFTK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0544 581 Pfam Plant invertase/pectin methylesterase inhibitor 45 201 IPR006501 GO:0004857
Lal12g0544 581 PANTHER PECTINESTERASE 4 579 - -
Lal12g0544 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 206 IPR035513 -
Lal12g0544 581 CDD PMEI-like_3 48 207 - -
Lal12g0544 581 Pfam Pectinesterase 262 558 IPR000070 GO:0030599|GO:0042545
Lal12g0544 581 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Lal12g0544 581 Gene3D - 258 579 IPR012334 -
Lal12g0544 581 PANTHER PECTINESTERASE 4 579 - -
Lal12g0544 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 33 202 IPR006501 GO:0004857
Lal12g0544 581 SUPERFAMILY Pectin lyase-like 258 576 IPR011050 -
Lal12g0544 581 SMART PMEI_2 41 201 IPR006501 GO:0004857
Lal12g0544 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 207 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0544 Lal-Chr12 3890751 3892787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0544 33 579 Carbohydrate Esterase AT2G26450 42.934 1.57e-140 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0544 K01051 - gmx:100775246 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0544 12 3890751 3892787 Lal12g0544 12 3890751 3892787 ECH
Lal12g0544 12 3890751 3892787 Lal13g0552 13 3593171 3595285 LSH
Lal5g0212 5 1829651 1832106 Lal12g0544 12 3890751 3892787 PCT
Lal18g0398 18 3380160 3382263 Lal12g0544 12 3890751 3892787 PCT