Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0543 ATGGAAGCTAGGTTTGGTACAGAAGCTTATCATTATTATGATATGGGTGGTGGATCCCATGATTTGAGGGGTTTGGGGAAAAGATCCACAGAGTGGGATTTGAATGAGTGGGGGTGGGATGGTGATATGTTCTTAGCTAGTCGGTTGAATCCGGCGGCCGCTGCTGGTGTGGGGCAGCAATTTTTCCCCCTTGGGTCCGGTATACCTGTGGCTGCAGTTGGGGGTTCCGGTTCCCCAAATGGTAGTTCTTCCGGTTACGAAGAAGCAGATCTTGAGAATAAAAAAGGGAACAAGGAAGGGGAGAGGAAAAGGAGGGTAATTGTGTTGGAGGATGATGGTTTGAATGAGGAAGCAGGTGCCCTTAGCTTAAAGCTTGGTGGTCATGGAGAACCATTATCAGATAGGGAGATTGTGAGCTGGGATGGTGTGAATGGCAAGAAAAGTAGAGTGGGTGGAGGTACTTTGAATCGAGCCGTTTGTCAGGTGGAGGATTGCGGTGCAGATCTGACCAAAGCTAGAGATTATCATCGGCGTCATAAAGTTTGTGAATTTCACTCCAAAGCTACTAATGCGCTTGTGGGAAATGCAATGCAGAGATTCTGTCAACAATGCAGTAGGTTTCACTTGCTTGAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGACTTGCAGGCCATAATAAACGCAGAAGGAAAACAAATCAGGAAGCTGTTCCGAATGGAAGTACAGTCAATGATGATCAGACTAGCAGTTATTTGTTGATAAGTTTATTGAAAATACTTTCAGATATGCAAAATGAGAGTTCAGATCATACTACAGAGCAGGATTTGCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGGTGAACAAGGGGTCAAGAACTTGTCTAACCTTTTGCGGGAACCAGAGAATTTGTTGAAAGAGGGGGGTTCGTCTGGGAAGTCAGGGATGGTTTCAACTTTCTTCTCCAATGGTTCTCAAGGCTCTCCAACTGATATAAGACAGCATCAAACAGTATCTATGAGTAAAATGCAACAGCAAGTGATGCTTATACATGATGCTAGGGTTACTGATCATCAAACTATGTCTTCTACAAAGCCCAGCATTACGAACAGTCCTCCAGCTTACACAGAAGCCAGGGAAAGTTCTGCTGGACAGGTCAAGATGAATAATTTTGATTTGAATGATATATATATTGACTCAGATGATGGAATTGAAGATGTAGAAAGATTGCCCATCTCCACAAATCATGGGACGAGCTCTCTTGACTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTAGAAACTCAGATTCTGCTTCTGCACAATCCCCTTCTAGTTCCAGTGGAGAAGCACAGAGCCGCACAGATCGAATCGTTTTCAAACTCTTTGGTAAAGAGCCAAATCATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATTGAGAGCTACATACGGCCTGGTTGTATTGTTTTAACCATTTATCTGCGTCAGGATGAGGTTGTGTGGGATGAGCTTTGCTGCAATCTGACTTCCAGTTTGAATAGGCTGCTGAATGTTTCAGATGATACTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAAGTTCTCATAGATAAATCCCTACCTTTCAAAAGTAACAATTATAGCAAGATTTTGAGTGTCAGTCCAATTGCTGTACCAGCATTGAGGAGAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATATGCTCTGCCACTAGGTTATTATGTGCTTTAGAAGGGAAATATCTTGTTTGTGAAGATGCTCATGAGTCAACGGATCAACAGTCCAAGGAGCTTGATGAGATCCAGTGCATCCAGTTTTCGTGTTCTGTCCCTGTGCTGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTTATAGTCGTCGAGGAGGATGTTTGCTCAGAAATCTGTTTGCTTGAGCCTCTACTAGAATTAAGTGAAACTGATCCAGATACTGATGGGACTGGAAAATTTGAAGCTAAAAGTCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAACCAATTGACATCTAGGATGATTCACTTGAAATCTAGTGCAGAACTCTTTCCATTAAAACGGTTCAAGTGGCTCATAGAGTTCTCTATGGATCATGATTGGTGTGCAGTGGTGAAAAAGCTATTGAACCTGCTGCTTGATGGAACTGTGAATTCAGGAGATTACCCTTCCCTATATCTTGCACTTTCAGAGATGGCCCTCCTTCACAGAGCTGTAAGGAGGAATAGCAAGCAGCTAGTGGAGCTGCTTTTAAGATATGTTCCTGAGAATGTTTCTGATCAAGTAGGAACTAAAGACAAGGAACTAGTTGATGGAGAGAATAAGAGCTTCTTGTTTAGACCTGATGTTGCTGGTCCCGCTGGTTTGACACCTCTCCATATAGCAGCTGGAAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAATCGAAGCGTGGAAGAATGCTCGTGACAGCACAGGCTCCACGCCTGAGGATTATGCGCGCTTACGTGGCCATTATATTTACATTCACTTAGTGCAGAAGAAAATTAATAGGAGACAAGGAGCACCTCATGTGGTGGTTGAGATTCCCAGCAATGTGACAGAAAGCACTACGAACCAGAAGCGAAATGAGTCATCTGCTACCTTCGAGATCGGAAAGGCTAAAGTAAAAGAAGTCGAAGGTCTCTGCAAAGTTTGTGATACTAAATTATCTTGTAGAAGTGCAGTAGGCAGGTCTATGGTATATAGACCTGCAATGCTGTCAATGGTGGCCATTGCAGCAGTCTGTGTTTGTGTGGCCCTTCTGTTTAAGAGTTCGCCGGAAGTTTTATATGTATTCCAACCCTTCAGGTGGGAGTCATTAGATTTCGGTACAAGCTAA 3054 0.4329 MEARFGTEAYHYYDMGGGSHDLRGLGKRSTEWDLNEWGWDGDMFLASRLNPAAAAGVGQQFFPLGSGIPVAAVGGSGSPNGSSSGYEEADLENKKGNKEGERKRRVIVLEDDGLNEEAGALSLKLGGHGEPLSDREIVSWDGVNGKKSRVGGGTLNRAVCQVEDCGADLTKARDYHRRHKVCEFHSKATNALVGNAMQRFCQQCSRFHLLEEFDEGKRSCRRRLAGHNKRRRKTNQEAVPNGSTVNDDQTSSYLLISLLKILSDMQNESSDHTTEQDLLTHLLRSLASQNGEQGVKNLSNLLREPENLLKEGGSSGKSGMVSTFFSNGSQGSPTDIRQHQTVSMSKMQQQVMLIHDARVTDHQTMSSTKPSITNSPPAYTEARESSAGQVKMNNFDLNDIYIDSDDGIEDVERLPISTNHGTSSLDYPWAQQDSHQSSPPQTSRNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNHFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEVVWDELCCNLTSSLNRLLNVSDDTFWRTGWVHIRVQHQIAFIFNGQVLIDKSLPFKSNNYSKILSVSPIAVPALRRAQFSVKGVNLICSATRLLCALEGKYLVCEDAHESTDQQSKELDEIQCIQFSCSVPVLNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICLLEPLLELSETDPDTDGTGKFEAKSQAMDFIHEMGWLLHRNQLTSRMIHLKSSAELFPLKRFKWLIEFSMDHDWCAVVKKLLNLLLDGTVNSGDYPSLYLALSEMALLHRAVRRNSKQLVELLLRYVPENVSDQVGTKDKELVDGENKSFLFRPDVAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYIYIHLVQKKINRRQGAPHVVVEIPSNVTESTTNQKRNESSATFEIGKAKVKEVEGLCKVCDTKLSCRSAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFQPFRWESLDFGTS 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0543 1017 ProSiteProfiles Zinc finger SBP-type profile. 157 234 IPR004333 GO:0003677
Lal12g0543 1017 MobiDBLite consensus disorder prediction 308 343 - -
Lal12g0543 1017 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 1016 IPR044817 GO:0003677
Lal12g0543 1017 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 19 1016 - -
Lal12g0543 1017 SUPERFAMILY SBT domain 158 238 IPR036893 GO:0003677|GO:0005634
Lal12g0543 1017 MobiDBLite consensus disorder prediction 361 387 - -
Lal12g0543 1017 SUPERFAMILY Ankyrin repeat 746 897 IPR036770 -
Lal12g0543 1017 MobiDBLite consensus disorder prediction 316 343 - -
Lal12g0543 1017 MobiDBLite consensus disorder prediction 224 246 - -
Lal12g0543 1017 MobiDBLite consensus disorder prediction 75 99 - -
Lal12g0543 1017 MobiDBLite consensus disorder prediction 417 463 - -
Lal12g0543 1017 Gene3D - 759 915 IPR036770 -
Lal12g0543 1017 Gene3D - 152 221 IPR036893 GO:0003677|GO:0005634
Lal12g0543 1017 Pfam SBP domain 160 233 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0543 Lal-Chr12 3880615 3887250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0543 1 1017 SBP-box Gene Family AT3G60030 53.913 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal12g0543 SBP 7.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0543 12 3880615 3887250 Lal12g0543 12 3880615 3887250 ECH
Lal12g0543 12 3880615 3887250 Lal13g0549 13 3569087 3578478 LSH
Lal12g0543 12 3880615 3887250 Lal24g0444 24 3116054 3122216 LSH