Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0533 ATGGAGAAGAATATGATGGTGAAGATGGAGGATACAATAGGGGATTCTTCCTTATCTGGTTATAATCCATTTGGTAACGTGTTTGATTTCTGTGAAGTGGAAAAAAGTTCTTCAGGGATTATGGAGTTACTGGGTGTGCATGACTATGGTAGTACTCTCCATTTTCTAGATATACCACAACAACGACTATCAACTATATCTGTGCCTAAGGTACTTCCATCTTTTGAGACTGTGAAGGAATGTAACTCTGAGTTGTTGAACCATCAACCTGCCACTCCTAACTCCTCTTCCATTTCATCCGCATCCACCATTGAAGCAGTCAATGATGAACAGAAGAACACTGTAGACCAAGCTGAAGAAGAACAAGAGAATAAGATCAAGAAACTGTTGAAGGCCAAGAAGGCTAATCAGAAGAGGCTTAGAGAACCAAGAGTGGCATTCATGACAAGAAGTGAGGTGGATCATCTAGAAGATGGTTACAGATGGAGAAAGTATGGTCAAAAAGCTGTGAAAAACAGCCCCTTCCCCAGGAGTTACTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACATGTGGAGCGTTCTTTTACTGATCCAAGCATTGTTGTTACAACCTATGAAGGCCAACACACACATCTAAGTACAGTTATTCCTCGCTCTATCTCTGCCACCAACTACTTATCTCAGTATCAACAACAACACTTTCAGCAACAACAACAACAACTCCTTTTCAATACATTGTCTTCTTTGAGTTTCCCTCACAATCATTCTACACCTTCAAAGATTGCTTTTGCTCAAGAGAGACTGGTTTGTAATCCAGGGAAAACTGCTGCATTTCTAAGGGACCATGGGTTGCTTCAGGATGTTGATGCTTCAGATATGTTGAAGCAAGAGTAG 900 0.4089 MEKNMMVKMEDTIGDSSLSGYNPFGNVFDFCEVEKSSSGIMELLGVHDYGSTLHFLDIPQQRLSTISVPKVLPSFETVKECNSELLNHQPATPNSSSISSASTIEAVNDEQKNTVDQAEEEQENKIKKLLKAKKANQKRLREPRVAFMTRSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKHVERSFTDPSIVVTTYEGQHTHLSTVIPRSISATNYLSQYQQQHFQQQQQQLLFNTLSSLSFPHNHSTPSKIAFAQERLVCNPGKTAAFLRDHGLLQDVDASDMLKQE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0533 299 PIRSF WRKY_txn_fact_IIc 1 299 IPR017396 GO:0003700
Lal12g0533 299 PANTHER WRKY TRANSCRIPTION FACTOR 15 291 - -
Lal12g0533 299 Coils Coil 101 139 - -
Lal12g0533 299 Pfam WRKY DNA -binding domain 157 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal12g0533 299 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 291 IPR044810 GO:0003700
Lal12g0533 299 ProSiteProfiles WRKY domain profile. 151 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal12g0533 299 SMART WRKY_cls 156 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal12g0533 299 Gene3D WRKY domain 143 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal12g0533 299 SUPERFAMILY WRKY DNA-binding domain 148 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0533 Lal-Chr12 3812299 3814531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0533 81 299 WRKY Transcription Factor Family AT2G47260 51.181 5.42e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal12g0533 WRKY 1.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0533 - - lang:109353563 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0533 12 3812299 3814531 Lal12g0533 12 3812299 3814531 ECH
Lal12g0533 12 3812299 3814531 Lal13g0537 13 3486964 3490265 LSH
Lal12g0533 12 3812299 3814531 Lal24g0433 24 3079136 3080796 LSH