Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0523 ATGAATCTCCACTTATCAATGGCACTAAGACCTTCATCTTTCGTGATTCTGCAGACATATGCTGCACTGGTAACTCTTTTCTCATTGACGCTATGGTGGTTTGTCATGGTCACACAAATAAAATATGTGATTTTGAACAATGAAAATGTTGTTAATCACATTATTGGCAATCAAAACATAAGCTTGTATTTGGATACCAAATATGGAAACCTTCTAGTACAAGGGATCAACTCTACTGGTTTGGTGGTTTCTAATGACATGATTTTCATCCAATCAGTGAATGCAAATGCAAATGGAAATATGAGAAGCAATGATAGTAGTAATGTCTCATGCAAGGGTGAATCCTGCTCTTCAGGTTTTATAATTTGGGATATTGTGGGAAGAGAAATGTTTTCTTATCTTTCTAATTTGGTTATGTTTCAGAAATATGTTTTAGCTGTGACTCAAAATGGAGGACCAGGCAGCATTGGTCTCAATGATTTTAAGAAAAGGGGATTGGCACTATTGATAGCAATGATGGTCACAACATTTATTGCTATGTTCAGTTTCCTATACTTAAATATTACAGCCACAAGGAGAGAAACGCAATTGTGTGCCTCACTCATAAAACAAATTGAAGCTACAAAACAAGCTGAGAGAAAGAATATGAATAAGAGTCTTGCTTTTGCAAGTGCCAGCCATGATGTTCGAACTTCTCTATCAGGTCTCACAGGTTTGATAGAGATGTCTTATGAGTTAGTTACACCACATTCAGAATTGGAAGCCAATTTAAAACAAATGAACAATTGTATCAGAGATTTACTAGGACTGTTGAATTCTATACTTGACACAAGCAAAATTGAGGCAGGAAAAATGCATCTTGAGGAAGAAGATTTTGATCTTTCCCATCTACTGGAAGATGTAGTTGATTTATACCATCCAGCGGGTATGAAGAAAGGTGTAGACATTGTATTGGACCCTTGTAATGGTTCTCTTATGAGATATTCACATGTGAAAGGTGATAGAGGAAAACTTAAACAGGTTTTGTGCAATTTATTGAGCAATGCTGTTAAATTTACTGATGAGGGGCACATAGCAGTTAGGGCATGGGCTAGGAAATCAAACTTGAAGGACTCAATAATGGATACTAACAACTATAGCTTTATTAAACATTTACCAAAGTTATTTTGTAAGAGAAAAAAAGCACATTGTGACATAGAAGAAGCAATGATTGCAATCCAACAAGAGAGTTCAATAGATGTTACATTTGAAGTGGATGACACGGGAAAAGGAATTCCTAAAGAAAAGTACATGTCTGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGCTCTTGGCCAAGGAGGAACTGGCTTGGGACTTGGGATTGTGCAGTCCTTGGTGCGTTTGATGCATGGAGACATTAGAATTGCGGAGAAGGATATAGGCGAAAAAGGAACTTGTTTCAGGTTCAATGTGGTCCTCAATGTATGTAGGACAATGAGGAATGGTAGCAGAAGGGAAGGTACTGAGTATGGATCAGGTGACAGAAACAATGCTCAAGGACTAACCATTAGAAGTACTAGTTCTGGTTCAAGCATTTATAATTCTTTGAATCCCGGGTTTCGAATTTGCAGCTATAGTCCTAAGCCACCAACTTCCCATGTTGTTCTTTTGATGGTAGACAAAGAGAGGCAAAGGACTTCACAAAGATTCATGGAGAGCTTTGGGATCAAAGTTAAGGTTGTGAATCATTGGAAACATTTGCTTGAAACTCTTAATAAGATTAAACATAAGGGTGATTCAGATTTGAGTTTTAGGTCCACATCTCATAGTCCTTTTCCAAGAGCCAGGGGAATTCATTTGACTTCAGTGGGTAGAACTGAACCAATGACTTCAGTTTTCAAGAAGACAGATACTATTGGAACTGCTCCATGTTTTATTCTGATTATCATTGATGCAAATGCAGGACCATTTTCTGAACTTTGCAAGATGGTATCTACCTTCAGAAAAGGCCTTCTTAACCCAAGTAAAGTTGTTTGGTTAAATAAGCCACTTTTGCATGGTAACAACTTTAAGATCCTTGACAAGGATTTGCTTGATCCAAATGATATTGTTCTTTCAAAACCTTTTCATGGTAGTCGTTTAACCCAAATTATAGAGCTTCTTCCTGAGTATGATGGTGCTTGGAAAAACAGTTCTAGCAGATCAAAAAGAGAAAGTGCAATTGATCATAGAATTGAAAGGACTTGTACAGAGTCAAGCTTATCAAAACAAAACTCCCCTTTGCATGATAAATCACAATTGGAACTAAATACTAATGGAAGTTCATTTCAATGTACTGAACAAATTATGAAGGGAGAATCACTAGTTCATCAAGGAGAAATACAAGAATGTGAAGGATCAAGCAATAAGAAACCATTGAGTGGTAAGAATATTTTGGTTGTTGAGGACAATGCCTTGTTACGCAAGCTAGCTTTGGCTACTTTGACTTCACTTGGTGCAACTATTGAGCAATGTCAGAATGGTGAAGAAGCTGTGAAGTTAGTTAAGGAAGGTCTTTCTAGGATGGATTTTCCTAATCTTCCTTATCATTACATCTTAATGGATTGTGAGATGCCAGTAATGAATGGGTTTGAGGCAACAAGACAGATAAGGGAGATGGAAAAGCTCTATGGTATTCGGATTCCTATCATTGCATTAACGGCTCATACTGATAACATAGTCACAGAGGATGGAATGGACTTTCATTTAGTGAAGCCCATTAAGGGTCAATGTGTACTTGAAGCCATCAGGCATGTACATGAGAGAGAATAA 2796 0.372 MNLHLSMALRPSSFVILQTYAALVTLFSLTLWWFVMVTQIKYVILNNENVVNHIIGNQNISLYLDTKYGNLLVQGINSTGLVVSNDMIFIQSVNANANGNMRSNDSSNVSCKGESCSSGFIIWDIVGREMFSYLSNLVMFQKYVLAVTQNGGPGSIGLNDFKKRGLALLIAMMVTTFIAMFSFLYLNITATRRETQLCASLIKQIEATKQAERKNMNKSLAFASASHDVRTSLSGLTGLIEMSYELVTPHSELEANLKQMNNCIRDLLGLLNSILDTSKIEAGKMHLEEEDFDLSHLLEDVVDLYHPAGMKKGVDIVLDPCNGSLMRYSHVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRAWARKSNLKDSIMDTNNYSFIKHLPKLFCKRKKAHCDIEEAMIAIQQESSIDVTFEVDDTGKGIPKEKYMSVFENYVQVKETALGQGGTGLGLGIVQSLVRLMHGDIRIAEKDIGEKGTCFRFNVVLNVCRTMRNGSRREGTEYGSGDRNNAQGLTIRSTSSGSSIYNSLNPGFRICSYSPKPPTSHVVLLMVDKERQRTSQRFMESFGIKVKVVNHWKHLLETLNKIKHKGDSDLSFRSTSHSPFPRARGIHLTSVGRTEPMTSVFKKTDTIGTAPCFILIIIDANAGPFSELCKMVSTFRKGLLNPSKVVWLNKPLLHGNNFKILDKDLLDPNDIVLSKPFHGSRLTQIIELLPEYDGAWKNSSSRSKRESAIDHRIERTCTESSLSKQNSPLHDKSQLELNTNGSSFQCTEQIMKGESLVHQGEIQECEGSSNKKPLSGKNILVVEDNALLRKLALATLTSLGATIEQCQNGEEAVKLVKEGLSRMDFPNLPYHYILMDCEMPVMNGFEATRQIREMEKLYGIRIPIIALTAHTDNIVTEDGMDFHLVKPIKGQCVLEAIRHVHERE 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0523 931 Pfam Response regulator receiver domain 806 924 IPR001789 GO:0000160
Lal12g0523 931 Gene3D - 204 283 - -
Lal12g0523 931 ProSiteProfiles Response regulatory domain profile. 805 928 IPR001789 GO:0000160
Lal12g0523 931 ProSiteProfiles Histidine kinase domain profile. 224 490 IPR005467 -
Lal12g0523 931 Pfam His Kinase A (phospho-acceptor) domain 220 283 IPR003661 GO:0000155|GO:0007165
Lal12g0523 931 PANTHER HISTIDINE KINASE CKI1 52 927 - -
Lal12g0523 931 SMART HKATPase_4 333 490 IPR003594 -
Lal12g0523 931 Gene3D - 284 493 IPR036890 -
Lal12g0523 931 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 272 485 IPR036890 -
Lal12g0523 931 SMART HisKA_10 217 283 IPR003661 GO:0000155|GO:0007165
Lal12g0523 931 SMART REC_2 804 924 IPR001789 GO:0000160
Lal12g0523 931 SUPERFAMILY CheY-like 800 929 IPR011006 -
Lal12g0523 931 CDD REC_hyHK_CKI1_RcsC-like 806 924 - -
Lal12g0523 931 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 333 488 IPR003594 -
Lal12g0523 931 Gene3D - 783 931 - -
Lal12g0523 931 PANTHER TWO-COMPONENT HISTIDINE KINASE 52 927 - -
Lal12g0523 931 PRINTS Bacterial sensor protein C-terminal signature 414 428 IPR004358 GO:0016310|GO:0016772
Lal12g0523 931 PRINTS Bacterial sensor protein C-terminal signature 432 442 IPR004358 GO:0016310|GO:0016772
Lal12g0523 931 PRINTS Bacterial sensor protein C-terminal signature 448 466 IPR004358 GO:0016310|GO:0016772
Lal12g0523 931 CDD HisKA 215 279 IPR003661 GO:0000155|GO:0007165
Lal12g0523 931 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 205 285 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0523 Lal-Chr12 3733615 3738865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0523 62 897 Histidine Kinase Gene Family AT2G47430 40.762 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal12g0523 HATPase_c 1.1e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0523 - - lang:109344729 1461.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0523 12 3733615 3738865 Lal12g0523 12 3733615 3738865 ECH