Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0501 AATATACATTTGTGGTTTCTGATAGATTGGAAGAAGATGGTGTCGCTGAAGCTTCAGAAGCGTCTTGCCGCTAGTGTCCTCAAGTGTGGAAGAGGCAAGGTTTGGCTTGACCCTAATGAAGGCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATTAGGAAGTTGGTTAAGGATGGCTTCATTATCAGGAAGCCCACTAAGATCCATTCCCGCTCACGTGCTCGCAGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCCGGTTATGGTAAGCGTAAGGGTACAAGAGAGGCTAGGCTTCCAACCAAAATCCTTTGGATGAGGAGGTTGCGTGTCCTTAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCATGATATGTACATGAAGGTAAAGGGTAATGTCTTTAAGAACAAGAGAGTTCTGATGGAAAGCATACACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTGTCTGACCAGTTTGAGGCCAAACGTGCTAAGAACAAGGCAAGCCGAGAAAGGAAGCATGCTCGGAGAGAAGAGCGATTTGCCCAGGGTCCTGGAGAGAAACCATCAGCAGCACCAGTTGCTCCAGCTGCAACAGCCACCCAAACTACCACAGCACCAAAGAAATCCAAGAAGTAA 675 0.4741 NIHLWFLIDWKKMVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRLRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGEKPSAAPVAPAATATQTTTAPKKSKK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0501 224 Gene3D - 14 68 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lal12g0501 224 PANTHER RIBOSOMAL PROTEIN L19 13 224 - -
Lal12g0501 224 Pfam Ribosomal protein L19e 16 157 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lal12g0501 224 Gene3D - 69 199 - -
Lal12g0501 224 ProSitePatterns Ribosomal protein L19e signature. 19 38 IPR023638 -
Lal12g0501 224 MobiDBLite consensus disorder prediction 156 224 - -
Lal12g0501 224 MobiDBLite consensus disorder prediction 72 91 - -
Lal12g0501 224 CDD Ribosomal_L19e_E 16 179 IPR033935 GO:0003735|GO:0022625
Lal12g0501 224 Hamap 50S ribosomal protein L19e [rpl19e]. 15 161 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lal12g0501 224 SUPERFAMILY Ribosomal protein L19 (L19e) 15 156 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lal12g0501 224 PANTHER 60S RIBOSOMAL PROTEIN L19 13 224 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lal12g0501 224 MobiDBLite consensus disorder prediction 208 224 - -
Lal12g0501 224 MobiDBLite consensus disorder prediction 156 196 - -
Lal12g0501 224 MobiDBLite consensus disorder prediction 72 97 - -
Lal12g0501 224 SMART Ribosomal_L19e_2 15 158 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0501 Lal-Chr12 3581022 3583084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0501 13 224 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.019 1.02e-124 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0501 K02885 - ming:122085408 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0501 12 3581022 3583084 Lal12g0501 12 3581022 3583084 ECH