Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0500 ATGTGTGGTGGTGCTATAATCGCTGACTTCATCCCTCGCCGTGGAAACCGCCGCCTCACCGCCTCTGAGATTTGGCCTAAGTCATTAGGGAAACAGCAGAATGACTTCGACTTAGATTCCTCTTACCAACAATCCACCATTGTCAAGAGATCATCTAAACCTTCCTTGGAAACGGTTAGTGAGCAAGTAGAGAAGCCTGTGAAGAGGCAGAGGAAGAATCTGTACAGAGGAATTCGGCAGCGACCGTGGGGAAAATGGGCAGCTGAAATTCGTGATCCTGGAAAAGGAGTTCGTGTTTGGCTTGGAACATTTAATACTGCTGAAGAAGCTGCTCGAGCCTATGATAGAGAAGCTCGAAAAATCCGAGGCAAAAAAGCTAAGGTCAATTTCCCTAATGAAGATGATGAGTATTCAATTCAAGCTCGTCATAATCGTCCACCTCTCCCACCACAAAAAAATCCATTGCATCAACAAACATACCGTTGTGGTAATTTGAATAATGCCCCAACTATTAAAAATCTGAACTTGGAGTTTGGTTATGATATGAACCAAGCTGGGGCAGTTTCTTCTCAACTTGTGACTGACCCAGTTATTATTTCGAGTGATGAAAAATGTGGGTCTGCAGGTTCAGAAGGTGCTTACTCCACAACGGTGAATGGGAATGGTTGTTTCAATGAAGAGGTGAATGTGAATGTGAAAGAGGTTTCAGAAGTGAAAGAGGTAATGAATGAAGGGCAAGAAGTAAAGAATGAAGTGCTGAAGCTTACAGAGGAGTTATTAGCTTATGAGAATTACATGAAGTTTTTTCAGATTCCTTACTATGATGGCCAATCAACTGAGTCAAATAATGTTCAGGAAAGCTTGGTTGGGGATCTTTGGAGTTTTGATGAATAA 894 0.4228 MCGGAIIADFIPRRGNRRLTASEIWPKSLGKQQNDFDLDSSYQQSTIVKRSSKPSLETVSEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPGKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARHNRPPLPPQKNPLHQQTYRCGNLNNAPTIKNLNLEFGYDMNQAGAVSSQLVTDPVIISSDEKCGSAGSEGAYSTTVNGNGCFNEEVNVNVKEVSEVKEVMNEGQEVKNEVLKLTEELLAYENYMKFFQIPYYDGQSTESNNVQESLVGDLWSFDE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0500 297 Coils Coil 238 258 - -
Lal12g0500 297 PANTHER EREBP TRANSCRIPTION FACTOR 1 276 - -
Lal12g0500 297 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Lal12g0500 297 PANTHER DNA-BINDING DOMAIN 1 276 IPR044808 GO:0003700|GO:0009873
Lal12g0500 297 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Lal12g0500 297 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Lal12g0500 297 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Lal12g0500 297 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Lal12g0500 297 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Lal12g0500 297 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Lal12g0500 297 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0500 Lal-Chr12 3575445 3577647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0500 1 132 AP2-EREBP Transcription Factor Family AT3G16770 54.412 4.40e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal12g0500 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0500 K09286 - gmx:100819416 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0500 12 3575445 3577647 Lal12g0500 12 3575445 3577647 ECH
Lal12g0500 12 3575445 3577647 Lal24g0402 24 2870754 2872340 LSH